SNP Profiles of AGU 3339.12/T3 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
1._AGU_3339_/12_[CHA]	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
2._AGU_3339_/12_[CHA]	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
3._AGU_3339_/12_[CHA]	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
4._AGU_3339_/12_[CHA]	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
5._GC-05-086-2-37	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
6._GC-05-086-2-37	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
7._GC-05-086-2-37	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
8._GC-05-086-2-37	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
9._GC-05-086-2-37	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT
10._AGU_3339_/12_[CHA]	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	AA	TT	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
1._AGU_3339_/12_[CHA]	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
2._AGU_3339_/12_[CHA]	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
3._AGU_3339_/12_[CHA]	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
4._AGU_3339_/12_[CHA]	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
5._GC-05-086-2-37	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
6._GC-05-086-2-37	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
7._GC-05-086-2-37	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
8._GC-05-086-2-37	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
9._GC-05-086-2-37	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT
10._AGU_3339_/12_[CHA]	CG	TT	TT	CC	GT	TT	CC	CG	GG	CC	AC	AG	AG	AT

	29	30	31	32	33	34	35
_Input profile	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._AGU_3339_/12_[CHA]	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AGU_3339_/12_[CHA]	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AGU_3339_/12_[CHA]	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AGU_3339_/12_[CHA]	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-05-086-2-37	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-05-086-2-37	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-05-086-2-37	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-05-086-2-37	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-05-086-2-37	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AGU_3339_/12_[CHA]	AG	CC	TT	GT	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AGU_3339_/12_[CHA]

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Mars Center for Cocoa Science, Brazil

Location: 5237 2 > FP

Dapeng Zhang, 2016

1._AGU_3339_/12_[CHA]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 5

Dapeng Zhang, 2016

2._AGU_3339_/12_[CHA]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 4

Dapeng Zhang, 2016

3._AGU_3339_/12_[CHA]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 3 > FP

Dapeng Zhang, 2016

4._AGU_3339_/12_[CHA]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 1 > FP

Dapeng Zhang, 2016

5._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

8._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._AGU_3339_/12_[CHA]

identical
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E280 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP619
21	TcSNP591	22	TcSNP577	23	TcSNP560	24	TcSNP534	25	TcSNP529
26	TcSNP469	27	TcSNP429	28	TcSNP372	29	TcSNP230	30	TcSNP193
31	TcSNP151	32	TcSNP150	33	TcSNP144	34	TcSNP32	35	TcSNP25