SNP Profiles of AGU 3339.12/T3 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
1._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
2._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
3._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
4._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
5._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
6._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
7._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA
8._AGU_3339_/12_[CHA]___	__	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	__	AA
9._AGU_3339_/12_[CHA]___	__	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	__	AA
10._AGU_3339_/12_[CHA]___	CC	GG	CC	CT	CT	AA	CT	GT	TT	CC	TT	AG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
1._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
2._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
3._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
4._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
5._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
6._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
7._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	GG	TT	CC	CG	GG	CC	AC
8._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	__	TT	CC	CG	GG	CC	AC
9._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	__	TT	CC	CG	GG	CC	AC
10._AGU_3339_/12_[CHA]___	TT	AT	CG	TT	TT	CC	GT	AG	TT	CC	CG	GG	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
1._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
2._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
3._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
4._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
5._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
6._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
7._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X
8._AGU_3339_/12_[CHA]___	AG	AG	AT	__	AG	__	CC	TT	GT	AC	AA	CG	X_X	X_X
9._AGU_3339_/12_[CHA]___	AG	AG	AT	__	AG	__	CC	TT	GT	AC	AA	CG	X_X	X_X
10._AGU_3339_/12_[CHA]___	AG	AG	AT	CC	AG	GG	CC	TT	GT	AC	AA	CG	X_X	X_X

Input profile: AGU_3339_/12_[CHA]

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Mars Center for Cocoa Science, Brazil

Location: 5237 4

Dapeng Zhang, 2016

1._AGU_3339_/12_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 5

Dapeng Zhang, 2016

2._AGU_3339_/12_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 3 > FP

Dapeng Zhang, 2016

3._AGU_3339_/12_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 1 > FP

Dapeng Zhang, 2016

4._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._AGU_3339_/12_[CHA]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5237 2 > FP

Dapeng Zhang, 2016

9._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._AGU_3339_/12_[CHA]

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E280 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25