SNP Profiles of NACIONAL View Data

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_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
1._AMAZ_5_/2___	__	__	CC	__	__	__	__	TT	__	CC	__	AG	__	AA
2._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
3._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
4._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
5._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
6._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
7._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
8._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
9._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
10._AMAZ_5_/2___	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	TT	AA
11._AMAZ_5_/2___	__	GG	CC	TT	__	__	__	TT	__	__	__	__	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	GG	GG	AA	TT	AA	CC	TT	TT	CC
1._AMAZ_5_/2___	__	__	__	__	__	CC	GG	AA	__	AA	GG	__	__	CC
2._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
3._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
4._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
5._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
6._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
7._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
8._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
9._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
10._AMAZ_5_/2___	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
11._AMAZ_5_/2___	__	__	__	__	TT	CC	GG	__	CT	AA	GG	GG	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
1._AMAZ_5_/2___	__	__	__	__	AA	__	__	__	__	AA	__	__	X_X	X_X
2._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
3._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
4._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
5._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
6._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
7._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
8._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
9._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
10._AMAZ_5_/2___	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
11._AMAZ_5_/2___	AA	__	AA	TT	AA	GG	AA	TT	TT	AA	__	__	X_X	X_X

Input profile: AMAZ_5_/2

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

1._AMAZ_5_/2 RUQ_93

50 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Cri
0.063 IMC
0.441 LCT
0.245 Nan
0.200

2._AMAZ_5_/2

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

3._AMAZ_5_/2

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

4._AMAZ_5_/2

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

5._AMAZ_5_/2

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

6._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

9._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

10._AMAZ_5_/2 RUQ_93

48.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._AMAZ_5_/2 RUQ_93

41.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25