SNP Profiles of B 13.1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
1._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
2._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
3._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
4._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
5._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
6._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
7._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
8._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
9._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
10._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
11._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
12._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
13._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
14._NA	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
15._NA	CT	AA	CG	CC	CT	AA	TT	_	CT	TT	AA	GG	CT	AA
16._NA	CT	AA	_	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
17._B_13_/1_[POU]	CT	AA	_	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
18._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	_	CT	TT	AA	GG	CT	AA
19._B_13_/1_[POU]	CT	AA	CG	CC	CT	AA	TT	GG	CT	TT	AA	GG	CT	AA
20._RUQ_348	CT	GG	GG	CT	CT	AA	TT	TT	CT	CC	AA	AG	CT	GG
21._B_13_/1_[POU]	CT	GG	GG	CT	CT	AA	TT	TT	CT	CC	AA	AG	CC	GG
22._RUQ_348	_	GG	GG	CT	_	_	_	TT	_	_	_	_	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
1._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
2._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
3._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
4._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
5._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
6._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
7._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
8._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
9._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
10._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
11._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
12._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
13._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
14._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
15._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
16._NA	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
17._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
18._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
19._B_13_/1_[POU]	CT	AT	CC	CC	CT	CG	GG	AA	CT	CC	CG	GT	CC	AA
20._RUQ_348	TT	AT	GG	TT	TT	GG	GG	AA	CT	CC	CG	GT	CT	CC
21._B_13_/1_[POU]	TT	AT	GG	TT	TT	GG	GG	AA	CT	CC	CG	GT	TT	CC
22._RUQ_348	_	_	_	_	TT	GG	GG	_	CT	CC	CG	GT	-	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
1._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
2._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
3._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
4._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
5._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
6._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
7._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
8._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
9._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
10._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
11._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
12._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
13._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
14._NA	AG	GG	AA	CT	AA	CC	AA	TT	_	CC	TT	CG	X_X	X_X
15._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
16._NA	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
17._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
18._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	GG	CC	TT	CG	X_X	X_X
19._B_13_/1_[POU]	AG	GG	AA	CT	AA	CC	AA	TT	_	CC	TT	CG	X_X	X_X
20._RUQ_348	AG	AG	AT	CC	AA	CC	CC	CC	TT	CC	TT	GG	X_X	X_X
21._B_13_/1_[POU]	AG	AG	AT	CC	AA	CC	CC	CC	TT	CC	TT	GG	X_X	X_X
22._RUQ_348	AG	_	AT	CC	AA	CC	CC	CC	TT	CC	_	_	X_X	X_X

Input profile: B_13_/1_[POU]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 11

Dapeng Zhang, 2016

1._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 9

Dapeng Zhang, 2016

2._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

3._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._B_13_/1_[POU] NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 2

Dapeng Zhang, 2016

11._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 4

Dapeng Zhang, 2016

12._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 6

Dapeng Zhang, 2016

13._B_13_/1_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 10

Dapeng Zhang, 2016

14._B_13_/1_[POU] NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._B_13_/1_[POU] NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._B_13_/1_[POU] NA

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

17._B_13_/1_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 3

Dapeng Zhang, 2016

18._B_13_/1_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 5

Dapeng Zhang, 2016

19._B_13_/1_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Borda Q6 7

Dapeng Zhang, 2016

20._B_13_/1_[POU] RUQ_348

61.3 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

21._B_13_/1_[POU]

58.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 548

Dapeng Zhang, 2016

22._B_13_/1_[POU] RUQ_348

54.3 %
23 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25