SNP Profiles of CL 9 /11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTCTAACTGGCTCTATAGCCAA
1._CL_9_/11
CTAGCGCTCTAACTGGCTCTATAGCCAA
2._CL_9_/11
CTAGCGCTCTAACTGGCTCTATAGCCAA
3._CL_9_/11
CTAGCGCTCTAACTGGCTCTATAGCCAA
4._GC-08-151-3-50
CTAGCGCTCTAACTGGCTCTATAGCCAA
5._GC-08-151-3-50
CTAGCGCTCTAACTGGCTCTATAGCCAA
6._GC-08-151-3-50
CTAGCGCTCTAACTGGCTCTATAGCCAA
7._GC-08-151-3-50
CTAGCGCTCTAACTGGCTCTATAGCCAA
8._CL_9_/11
CTAGCGCTCT__CTGGCTCTATAG__AA
9._GC-08-151-3-50
CTAGCGCTCT__CTGGCTCTATAG__AA
10._CL_9_/11
CTAGCCCCTTCCCTGTTTCCATGGCCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGGAGTTCCCGGGCTAC
1._CL_9_/11
TTATGGCTCTGGGGAGTTCCCGGGCTAC
2._CL_9_/11
TTATGGCTCTGGGGAGTTCCCGGGCTAC
3._CL_9_/11
TTATGGCTCTGGGGAGTTCCCGGGCTAC
4._GC-08-151-3-50
TTATGGCTCTGGGGAGTTCCCGGGCTAC
5._GC-08-151-3-50
TTATGGCTCTGGGGAGTTCCCGGGCTAC
6._GC-08-151-3-50
TTATGGCTCTGGGGAGTTCCCGGGCTAC
7._GC-08-151-3-50
TTATGGCTCTGGGGAGTTCCCGGGCTAC
8._CL_9_/11
TTATGGCTCTGGGGAGTTCCCGGGCTAC
9._GC-08-151-3-50
TTATGGCTCTGGGGAGTTCCCGGGCTAC
10._CL_9_/11
TTATGGCTCTGGTTGGTTCCCCGGCCAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
1._CL_9_/11
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
2._CL_9_/11
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
3._CL_9_/11
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
4._GC-08-151-3-50
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
5._GC-08-151-3-50
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
6._GC-08-151-3-50
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
7._GC-08-151-3-50
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
8._CL_9_/11
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
9._GC-08-151-3-50
GGAGCCAACCCCCTGGCCAACGX_XX_XX_X
10._CL_9_/11
GGGGCCAGCCCCCCTTCCAAGGX_XX_XX_X

Input profile: CL_9_/11

 
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Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

1._CL_9_/11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

2._CL_9_/11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

3._CL_9_/11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

4._CL_9_/11 GC-08-151-3-50

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._CL_9_/11 GC-08-151-3-50

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._CL_9_/11 GC-08-151-3-50

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._CL_9_/11 GC-08-151-3-50

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._CL_9_/11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016

9._CL_9_/11 GC-08-151-3-50

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._CL_9_/11

70.5 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25