SNP Profiles of CL 9 /11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
20._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
21._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
22._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
23._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
24._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
25._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
26._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
27._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
28._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
29._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
30._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
31._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
32._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
33._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
34._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
35._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
36._EET_19_[ECU]___
__AGCGCT______GT________CCAG
37._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
38._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
39._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
40._EET_19_[ECU]___
____CG________GT__CT__AG__AG
41._EET_19_[ECU]___
____CG__________________CC__
42._EET_19_[ECU]___
GGAGCGAAAGACAGCC____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGGAGCCCGGGCTACGG
1._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
2._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
3._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
4._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
5._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
6._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
7._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
8._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
9._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
10._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
11._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
12._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
13._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
14._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
15._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
16._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
17._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
18._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
19._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
20._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
21._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
22._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
23._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
24._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
25._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
26._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
27._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
28._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
29._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCTACGG
30._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
31._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
32._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
33._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
34._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
35._EET_19_[ECU]___
TTATGGCTCTGGGGAGCCCGGGCT__GG
36._EET_19_[ECU]___
________TTGGGG__CCCGGGCTACGG
37._EET_19_[ECU]___
TTATGGCTCTGGGGGGCCCGGGCTACGG
38._EET_19_[ECU]___
TTATGGCTCTGGGGGGCCCGGGCTACGG
39._EET_19_[ECU]___
TTATGGCTCTGGGGGGCCCGGGCTACGG
40._EET_19_[ECU]___
__________GGGGGGCCCG____AC__
41._EET_19_[ECU]___
TT______CTCC____CCCG________
42._EET_19_[ECU]___
AGATGGAGAGCGCC__CCCGAC__AC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
1._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
2._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
3._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
4._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
5._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
6._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
7._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
8._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
9._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
10._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
11._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
12._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
13._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
14._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
15._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
16._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
17._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
18._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
19._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
20._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
21._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
22._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
23._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
24._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
25._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
26._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
27._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
28._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
29._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
30._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
31._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
32._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
33._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
34._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
35._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
36._EET_19_[ECU]___
__ATCCAGCCCCCTGTCC____X_XX_XX_X
37._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
38._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
39._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
40._EET_19_[ECU]___
______AG________CC____X_XX_XX_X
41._EET_19_[ECU]___
__AT__AGGGCCCT__CC____X_XX_XX_X
42._EET_19_[ECU]___
AGATAGAACGCCAACCCCATCGX_XX_XX_X

Input profile: EET_19_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

1._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016

8._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

17._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

19._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

20._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

21._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

22._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

23._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

24._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

25._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

26._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

27._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

28._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

29._EET_19_[ECU]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

30._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

32._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._EET_19_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

34._EET_19_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

35._EET_19_[ECU]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

36._EET_19_[ECU] RUQ_1630

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_19_[ECU]

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

38._EET_19_[ECU] RUQ_1630

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._EET_19_[ECU]

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.246 Cri
0.121 Nac
0.612

41._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

51.5 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25