SNP Profiles of EET 19 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
20._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
21._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
22._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
23._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
24._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
25._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
26._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
27._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
28._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
29._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
30._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
31._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
32._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
33._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
34._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
35._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
36._EET_19_[ECU]___
__AGCGCT______GT________CCAG
37._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
38._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
39._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
40._EET_19_[ECU]___
____CG________GT__CT__AG__AG
41._EET_19_[ECU]___
____CG__________________CC__
42._EET_19_[ECU]___
GGAGCGAAAGACAGCC____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGGAGTTCCCGGGCTAC
1._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
2._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
3._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
4._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
5._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
6._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
7._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
8._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
9._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
10._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
11._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
12._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
13._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
14._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
15._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
16._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
17._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
18._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
19._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
20._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
21._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
22._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
23._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
24._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
25._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
26._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
27._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTAC
28._EET_19_[ECU]___
TTATGGCTCTGGGGAG__CCCGGGCTAC
29._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
30._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
31._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
32._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
33._EET_19_[ECU]___
TTATGGCTCTGGGGAG__CCCGGGCTAC
34._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
35._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCT__
36._EET_19_[ECU]___
________TTGGGG__TTCCCGGGCTAC
37._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTAC
38._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTAC
39._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTAC
40._EET_19_[ECU]___
__________GGGGGG__CCCG____AC
41._EET_19_[ECU]___
TT______CTCC______CCCG______
42._EET_19_[ECU]___
AGATGGAGAGCGCC__GGCCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
1._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
2._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
3._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
4._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
5._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
6._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
7._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
8._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
9._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
10._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
11._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
12._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
13._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
14._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
15._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
16._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
17._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
18._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
19._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
20._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
21._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
22._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
23._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
24._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
25._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
26._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
27._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
28._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
29._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
30._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
31._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
32._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
33._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
34._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
35._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
36._EET_19_[ECU]___
GG__ATCCAGCCCCCTGTCC____X_XX_X
37._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
38._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
39._EET_19_[ECU]___
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
40._EET_19_[ECU]___
________AG________CC____X_XX_X
41._EET_19_[ECU]___
____AT__AGGGCCCT__CC____X_XX_X
42._EET_19_[ECU]___
__AGATAGAACGCCAACCCCATCGX_XX_X

Input profile: EET_19_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

1._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016

7._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

16._EET_19_[ECU] GC-08-085-2-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

18._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

19._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

20._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

21._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

22._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

23._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

24._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

25._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

26._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

27._EET_19_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

28._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

29._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

31._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

33._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

34._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

35._EET_19_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

36._EET_19_[ECU] RUQ_1630

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_19_[ECU]

97.5 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

38._EET_19_[ECU] RUQ_1630

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._EET_19_[ECU]

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.246 Cri
0.121 Nac
0.612

41._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

50 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25