SNP Profiles of HUALLAGA 15   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
1._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
2._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
3._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
4._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
5._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
6._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
7._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
8._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
9._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
10._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
11._GC-01-025-2-02
ATCCCTAAAGGGCCCCCCCTAGTTCTTT
12._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
13._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
14._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
15._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
16._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
17._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
18._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
19._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
20._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
21._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
22._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
23._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
24._HUALLAGA_15
ATCCCTAA____CCCTAG_CT_
 1516171819202122232425262728
_Input profile
ATCCAAGGGGGGGGCTAATTGGTTAACC
1._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
2._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
3._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
4._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
5._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
6._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
7._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
8._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
9._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
10._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
11._GC-01-025-2-02
ATCCAAGGGGGGGGCTAATTGGTTAACC
12._HUALLAGA_15
___GG__GG____TTAA_
13._HUALLAGA_15
___GG__GG____TTAA_
14._HUALLAGA_15
___GG__GG____TTAA_
15._HUALLAGA_15
___GG__GG____TTAA_
16._HUALLAGA_15
___GG__GG____TTAA_
17._HUALLAGA_15
___GG__GG____TTAA_
18._HUALLAGA_15
___GG__GG____TTAA_
19._HUALLAGA_15
___GG__GG____TTAA_
20._HUALLAGA_15
___GG__GG____TTAA_
21._HUALLAGA_15
___GG__GG____TTAA_
22._HUALLAGA_15
___GG__GG____TTAA_
23._HUALLAGA_15
___GG__GG____TTAA_
24._HUALLAGA_15
___GG__GG____TTAA_
 2930313233343536373839404142
_Input profile
GGAATTGGGGCCAAGGGGTTAACTGGCC
1._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
2._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
3._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
4._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
5._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
6._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
7._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
8._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
9._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
10._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
11._GC-01-025-2-02
GGAATTGGGGCCAAGGGGTTAACTGGCC
12._HUALLAGA_15
GGAA____AAGG__AA___
13._HUALLAGA_15
GGAA____AAGG__AA___
14._HUALLAGA_15
GGAA____AAGG__AA___
15._HUALLAGA_15
GGAA____AAGG__AA___
16._HUALLAGA_15
GGAA____AAGG__AA___
17._HUALLAGA_15
GGAA____AAGG__AA___
18._HUALLAGA_15
GGAA____AAGG__AA___
19._HUALLAGA_15
GGAA____AAGG__AA___
20._HUALLAGA_15
GGAA____AAGG__AA___
21._HUALLAGA_15
GGAA____AAGG__AA___
22._HUALLAGA_15
GGAA____AAGG__AA___
23._HUALLAGA_15
GGAA____AAGG__AA___
24._HUALLAGA_15
GGAA____AAGG__AG___
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
1._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
2._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
3._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
4._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
5._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
6._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
7._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
8._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
9._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
10._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
11._GC-01-025-2-02
GGTTTTAGAGAGCCCCGGAGGGTTCTCC
12._HUALLAGA_15
__TT_________CTCC
13._HUALLAGA_15
__TT_________CTCC
14._HUALLAGA_15
__TT_________CTCC
15._HUALLAGA_15
__TT_________CTCC
16._HUALLAGA_15
__TT_________CTCC
17._HUALLAGA_15
__TT_________CTCC
18._HUALLAGA_15
__TT_________CTCC
19._HUALLAGA_15
__TT_________CTCC
20._HUALLAGA_15
__TT_________CTCC
21._HUALLAGA_15
__TT_________CTCC
22._HUALLAGA_15
__TT_________CTCC
23._HUALLAGA_15
__TT_________CTCC
24._HUALLAGA_15
__TT_________CTCC
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
1._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
2._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
3._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
4._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
5._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
6._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
7._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
8._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
9._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
10._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
11._GC-01-025-2-02
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
12._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
13._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
14._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
15._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
16._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
17._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
18._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
19._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
20._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
21._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
22._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
23._HUALLAGA_15
__CG_TTAAGG_CCAGGGTT__
24._HUALLAGA_15
__CG_TTACGG_CCAGGGTT__
 7172737475767778798081828384
_Input profile
CGAACCCCGGCCCCAAACGGCCAAAACC
1._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
2._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
3._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
4._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
5._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
6._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
7._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
8._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
9._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
10._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
11._GC-01-025-2-02
CGAACCCCGGCCCCAAACGGCCAAAACC
12._HUALLAGA_15
_AACC_____ACGG___CC
13._HUALLAGA_15
_AACC_____ACGG___CC
14._HUALLAGA_15
_AACC_____ACGG___CC
15._HUALLAGA_15
_AACC_____ACGG___CC
16._HUALLAGA_15
_AACC_____ACGG___CC
17._HUALLAGA_15
_AACC_____ACGG___CC
18._HUALLAGA_15
_AACC_____ACGG___CC
19._HUALLAGA_15
_AACC_____ACGG___CC
20._HUALLAGA_15
_AACC_____ACGG___CC
21._HUALLAGA_15
_AACC_____ACGG___CC
22._HUALLAGA_15
_AACC_____ACGG___CC
23._HUALLAGA_15
_AACC_____ACGG___CC
24._HUALLAGA_15
_AACC_____ACGG___CC
 85868788899091929394    
_Input profile
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
1._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
2._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
3._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
4._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
5._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
6._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
7._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
8._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
9._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
10._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
11._GC-01-025-2-02
CTCCCTAACCCCGTCTATGGX_XX_XX_XX_X
12._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
13._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
14._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
15._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
16._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
17._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
18._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
19._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
20._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
21._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
22._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
23._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X
24._HUALLAGA_15
CTCC_AA_CCGTCT__X_XX_XX_XX_X

Input profile: HUALLAGA_15 GC-01-025-2-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

6._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

7._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._HUALLAGA_15 GC-01-025-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 6 > FP
 Dapeng Zhang, 2016

13._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 3
 Dapeng Zhang, 2016

15._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 5
 Dapeng Zhang, 2016

16._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 9
 Dapeng Zhang, 2016

17._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 10
 Dapeng Zhang, 2016

18._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 11
 Dapeng Zhang, 2016

19._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 12
 Dapeng Zhang, 2016

20._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 14
 Dapeng Zhang, 2016

21._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 1 > FP
 Dapeng Zhang, 2016

22._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 4 > FP
 Dapeng Zhang, 2016

23._HUALLAGA_15

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1202 8 > FP
 Dapeng Zhang, 2016

24._HUALLAGA_15

97.4 %
39 shared markers

 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240