SNP Profiles of HUALLAGA 56   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
1._GC-07-022-1-24
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
2._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
3._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
4._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
5._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
6._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
7._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
8._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
9._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
10._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
11._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
12._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
13._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
14._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
15._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
16._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
17._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
18._GC-01-030-2-07
ATCCCCCCAGAGCTCTCCCTGGTTCTTT
19._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
20._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
21._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
 1516171819202122232425262728
_Input profile
AAAAAAGGGGCCGGCTAATTGGTTAACC
1._GC-07-022-1-24
AAAAAAGGGGCCGGCTAATTGGTTAACC
2._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
3._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
4._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
5._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
6._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
7._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
8._HUALLAGA_56
___GG__GG____TTAA_
9._HUALLAGA_56
___GG__GG____TTAA_
10._HUALLAGA_56
___GG__GG____TTAA_
11._HUALLAGA_56
___GG__GG____TTAA_
12._HUALLAGA_56
___GG__GG____TTAA_
13._HUALLAGA_56
___GG__GG____TTAA_
14._HUALLAGA_56
___GG__GG____TTAA_
15._HUALLAGA_56
___GG__GG____TTAA_
16._HUALLAGA_56
___GG__GG____TTAA_
17._HUALLAGA_56
___GG__GG____TTAA_
18._GC-01-030-2-07
ATAAAAGGCGCGCGCCAATTGGATAACG
19._HUALLAGA_56
___GG__CG____ATAA_
20._HUALLAGA_56
___GG__CG____ATAA_
21._HUALLAGA_56
___GG__CG____ATAA_
 2930313233343536373839404142
_Input profile
CGAATTGGGGCCAAGGGGTTAACCGGCC
1._GC-07-022-1-24
CGAATTGGGGCCAAGGGGTTAACCGGCC
2._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
3._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
4._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
5._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
6._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
7._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
8._HUALLAGA_56
CGAA____AAGG__AA___
9._HUALLAGA_56
CGAA____AAGG__AA___
10._HUALLAGA_56
CGAA____AAGG__AA___
11._HUALLAGA_56
CGAA____AAGG__AA___
12._HUALLAGA_56
CGAA____AAGG__AA___
13._HUALLAGA_56
CGAA____AAGG__AA___
14._HUALLAGA_56
CGAA____AAGG__AA___
15._HUALLAGA_56
CGAA____AAGG__AA___
16._HUALLAGA_56
CGAA____AAGG__AA___
17._HUALLAGA_56
CGAA____AAGG__AG___
18._GC-01-030-2-07
CCATTTGTGGCCAAGGGTTTAACCGGCC
19._HUALLAGA_56
CCAT____AAGG__AA___
20._HUALLAGA_56
CCAT____AAGG__AA___
21._HUALLAGA_56
CCAT____AAGG__AA___
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-07-022-1-24
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
4._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
5._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
6._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
7._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
8._HUALLAGA_56
__TT_________CCCC
9._HUALLAGA_56
__TT_________CCCC
10._HUALLAGA_56
__TT_________CCCC
11._HUALLAGA_56
__TT_________CCCC
12._HUALLAGA_56
__TT_________CCCC
13._HUALLAGA_56
__TT_________CCCC
14._HUALLAGA_56
__TT_________CCCC
15._HUALLAGA_56
__TT_________CCCC
16._HUALLAGA_56
__TT_________CCCC
17._HUALLAGA_56
__TT_________CCCC
18._GC-01-030-2-07
GGTTTTGGAAAACCACAGAAGTTTCTCC
19._HUALLAGA_56
__TT_________CTCC
20._HUALLAGA_56
__TT_________CTCC
21._HUALLAGA_56
__TT_________CTCC
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
1._GC-07-022-1-24
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
2._GC-01-030-2-07
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
3._GC-01-030-2-07
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
4._GC-01-030-2-07
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
5._GC-01-030-2-07
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
6._GC-01-030-2-07
TTGGCGCCTTAAGGGGCCAGGGTTAGTT
7._GC-01-030-2-07
TTGGCGCCTT_GGGGCCAGGGTTAGTT
8._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
9._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
10._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
11._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
12._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
13._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
14._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
15._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
16._HUALLAGA_56
__CG_TT_GG_CCAGGGTT__
17._HUALLAGA_56
__CG_TTAAGG_CCAGGGTT__
18._GC-01-030-2-07
TTGGCGCCTTCCCGGGCCAGGTGGAGTT
19._HUALLAGA_56
__CG_TTCCCG_CCAGGTGG__
20._HUALLAGA_56
__CG_TTCCCG_CCAGGTGG__
21._HUALLAGA_56
__CG_TTCCCG_CCAGGTGG__
 7172737475767778798081828384
_Input profile
CGAACTACAACCCCAAACGGCCAAAACC
1._GC-07-022-1-24
CGAACTACAACCCCAAACGGCCAAAACC
2._GC-01-030-2-07
CGAACTACAACCCCAAACGGCCAAAACC
3._GC-01-030-2-07
CGAACTACAACCCCAAACGGCCAAAACC
4._GC-01-030-2-07
CGAACTACAACCCCAAACGGCCAAAACC
5._GC-01-030-2-07
CGAACTACAACCCCAAACGGCCAAAACC
6._GC-01-030-2-07
_AACTACAACCCCAAACGGCCAAAACC
7._GC-01-030-2-07
CGAACTACAACCCCAAACGGCCAAAACC
8._HUALLAGA_56
_AACT_____ACGG___CC
9._HUALLAGA_56
_AACT_____ACGG___CC
10._HUALLAGA_56
_AACT_____ACGG___CC
11._HUALLAGA_56
_AACT_____ACGG___CC
12._HUALLAGA_56
_AACT_____ACGG___CC
13._HUALLAGA_56
_AACT_____ACGG___CC
14._HUALLAGA_56
_AACT_____ACGG___CC
15._HUALLAGA_56
_AACT_____ACGG___CC
16._HUALLAGA_56
_AACT_____ACGG___CC
17._HUALLAGA_56
_AACT_____ACGG___CC
18._GC-01-030-2-07
CCAACCACAGCCCCAAAACGCCAACCCT
19._HUALLAGA_56
_AACC_____AACG___CT
20._HUALLAGA_56
_AACC_____AACG___CT
21._HUALLAGA_56
_AACC_____AACG___CT
 858687888990919293     
_Input profile
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
1._GC-07-022-1-24
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
2._GC-01-030-2-07
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
3._GC-01-030-2-07
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
4._GC-01-030-2-07
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
5._GC-01-030-2-07
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
6._GC-01-030-2-07
CTCCTTAACCCTGTAAGGX_XX_XX_XX_XX_X
7._GC-01-030-2-07
CTCC_AACCCTGTAAGGX_XX_XX_XX_XX_X
8._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
9._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
10._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
11._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
12._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
13._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
14._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
15._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
16._HUALLAGA_56
CTCC_AA_CTGT__X_XX_XX_XX_XX_X
17._HUALLAGA_56
CTCC_AA_TTGT__X_XX_XX_XX_XX_X
18._GC-01-030-2-07
CTCCCCAGCCCTGGTTGGX_XX_XX_XX_XX_X
19._HUALLAGA_56
CTCC_AG_CTGG__X_XX_XX_XX_XX_X
20._HUALLAGA_56
CTCC_AG_CTGG__X_XX_XX_XX_XX_X
21._HUALLAGA_56
CTCC_AG_CTGG__X_XX_XX_XX_XX_X

Input profile: HUALLAGA_56 GC-01-030-2-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._HUALLAGA_56 GC-07-022-1-24

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._HUALLAGA_56 GC-01-030-2-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._HUALLAGA_56 GC-01-030-2-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

4._HUALLAGA_56 GC-01-030-2-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._HUALLAGA_56 GC-01-030-2-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._HUALLAGA_56 GC-01-030-2-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._HUALLAGA_56 GC-01-030-2-07

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 9
 Dapeng Zhang, 2016

9._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 10
 Dapeng Zhang, 2016

11._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 14
 Dapeng Zhang, 2016

12._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 1 > FP
 Dapeng Zhang, 2016

13._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 13 > F
 Dapeng Zhang, 2016

14._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 1 > FP
 Dapeng Zhang, 2016

15._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 4 > FP
 Dapeng Zhang, 2016

16._HUALLAGA_56

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 15
 Dapeng Zhang, 2016

17._HUALLAGA_56

97.4 %
38 shared markers

 Dapeng Zhang, 2016

18._HUALLAGA_56 GC-01-030-2-07

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 3 > FP
 Dapeng Zhang, 2016

20._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 16
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 2 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP154 93TcSNP240