SNP Profiles of HUALLAGA-56   View Data

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 1234567891011121314
_Input profile
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
1._GC-07-022-1-24
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
2._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
3._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
4._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
5._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
6._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
7._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
8._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
9._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
10._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
11._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
12._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
13._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
14._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
15._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
16._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
17._HUALLAGA_56
ATCCCCAA________CCCCGG__CT__
18._GC-01-030-2-07
ATCCCCCCAGAGCTCTCCCTGGTTCTTT
19._HUALLAGA_56
ATCCCCCC________CCCTGG__CT__
20._HUALLAGA_56
ATCCCCCC________CCCTGG__CT__
21._HUALLAGA_56
ATCCCCCC________CCCTGG__CT__
 1516171819202122232425262728
_Input profile
AAAAAAGGGGCCGGCTAATTGGTTAACC
1._GC-07-022-1-24
AAAAAAGGGGCCGGCTAATTGGTTAACC
2._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
3._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
4._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
5._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
6._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
7._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
8._HUALLAGA_56
______GG____GG________TTAA__
9._HUALLAGA_56
______GG____GG________TTAA__
10._HUALLAGA_56
______GG____GG________TTAA__
11._HUALLAGA_56
______GG____GG________TTAA__
12._HUALLAGA_56
______GG____GG________TTAA__
13._HUALLAGA_56
______GG____GG________TTAA__
14._HUALLAGA_56
______GG____GG________TTAA__
15._HUALLAGA_56
______GG____GG________TTAA__
16._HUALLAGA_56
______GG____GG________TTAA__
17._HUALLAGA_56
______GG____GG________TTAA__
18._GC-01-030-2-07
ATAAAAGGCGCGCGCCAATTGGATAACG
19._HUALLAGA_56
______GG____CG________ATAA__
20._HUALLAGA_56
______GG____CG________ATAA__
21._HUALLAGA_56
______GG____CG________ATAA__
 2930313233343536373839404142
_Input profile
CGAATTGGGGCCAAGGGGTTAACCGGCC
1._GC-07-022-1-24
CGAATTGGGGCCAAGGGGTTAACCGGCC
2._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
3._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
4._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
5._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
6._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
7._GC-01-030-2-07
CGAATTGGGGCCAAGGGGTTAACCGGCC
8._HUALLAGA_56
CGAA________AAGG____AA______
9._HUALLAGA_56
CGAA________AAGG____AA______
10._HUALLAGA_56
CGAA________AAGG____AA______
11._HUALLAGA_56
CGAA________AAGG____AA______
12._HUALLAGA_56
CGAA________AAGG____AA______
13._HUALLAGA_56
CGAA________AAGG____AA______
14._HUALLAGA_56
CGAA________AAGG____AA______
15._HUALLAGA_56
CGAA________AAGG____AA______
16._HUALLAGA_56
CGAA________AAGG____AA______
17._HUALLAGA_56
CGAA________AAGG____AG______
18._GC-01-030-2-07
CCATTTGTGGCCAAGGGTTTAACCGGCC
19._HUALLAGA_56
CCAT________AAGG____AA______
20._HUALLAGA_56
CCAT________AAGG____AA______
21._HUALLAGA_56
CCAT________AAGG____AA______
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-07-022-1-24
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
4._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
5._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
6._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
7._GC-01-030-2-07
GGTTTTAAGGAACCCCGGAGGGTTCCCC
8._HUALLAGA_56
____TT__________________CCCC
9._HUALLAGA_56
____TT__________________CCCC
10._HUALLAGA_56
____TT__________________CCCC
11._HUALLAGA_56
____TT__________________CCCC
12._HUALLAGA_56
____TT__________________CCCC
13._HUALLAGA_56
____TT__________________CCCC
14._HUALLAGA_56
____TT__________________CCCC
15._HUALLAGA_56
____TT__________________CCCC
16._HUALLAGA_56
____TT__________________CCCC
17._HUALLAGA_56
____TT__________________CCCC
18._GC-01-030-2-07
GGTTTTGGAAAACCACAGAAGTTTCTCC
19._HUALLAGA_56
____TT__________________CTCC
20._HUALLAGA_56
____TT__________________CTCC
21._HUALLAGA_56
____TT__________________CTCC
 5758596061626364656667686970
_Input profile
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
1._GC-07-022-1-24
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
2._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
3._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
4._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
5._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
6._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTT__
7._GC-01-030-2-07
TTGGCGCCTTGGGGCCAGGGTTAGTTCG
8._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
9._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
10._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
11._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
12._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
13._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
14._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
15._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
16._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
17._HUALLAGA_56
____CG__TTGG__CCAGGGTT______
18._GC-01-030-2-07
TTGGCGCCTTCGGGCCAGGTGGAGTTCC
19._HUALLAGA_56
____CG__TTCG__CCAGGTGG______
20._HUALLAGA_56
____CG__TTCG__CCAGGTGG______
21._HUALLAGA_56
____CG__TTCG__CCAGGTGG______
 7172737475767778798081828384
_Input profile
AACTACAACCCCAAACGGCCAAAACCCT
1._GC-07-022-1-24
AACTACAACCCCAAACGGCCAAAACCCT
2._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
3._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
4._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
5._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
6._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
7._GC-01-030-2-07
AACTACAACCCCAAACGGCCAAAACCCT
8._HUALLAGA_56
AACT__________ACGG______CCCT
9._HUALLAGA_56
AACT__________ACGG______CCCT
10._HUALLAGA_56
AACT__________ACGG______CCCT
11._HUALLAGA_56
AACT__________ACGG______CCCT
12._HUALLAGA_56
AACT__________ACGG______CCCT
13._HUALLAGA_56
AACT__________ACGG______CCCT
14._HUALLAGA_56
AACT__________ACGG______CCCT
15._HUALLAGA_56
AACT__________ACGG______CCCT
16._HUALLAGA_56
AACT__________ACGG______CCCT
17._HUALLAGA_56
AACT__________ACGG______CCCT
18._GC-01-030-2-07
AACCACAGCCCCAAAACGCCAACCCTCT
19._HUALLAGA_56
AACC__________AACG______CTCT
20._HUALLAGA_56
AACC__________AACG______CTCT
21._HUALLAGA_56
AACC__________AACG______CTCT
 8586878889909192      
_Input profile
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-07-022-1-24
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-030-2-07
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-030-2-07
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-030-2-07
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-030-2-07
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-030-2-07
CCAACCCTGTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-030-2-07
CCAACCCTGT__AAGGX_XX_XX_XX_XX_XX_X
8._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
9._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
10._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
11._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
12._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
13._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
14._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
15._HUALLAGA_56
CCAA__CTGTTT____X_XX_XX_XX_XX_XX_X
16._HUALLAGA_56
CCAA__CTGT______X_XX_XX_XX_XX_XX_X
17._HUALLAGA_56
CCAA__TTGTTT____X_XX_XX_XX_XX_XX_X
18._GC-01-030-2-07
CCAGCCCTGGCCTTGGX_XX_XX_XX_XX_XX_X
19._HUALLAGA_56
CCAG__CTGGCC____X_XX_XX_XX_XX_XX_X
20._HUALLAGA_56
CCAG__CTGGCC____X_XX_XX_XX_XX_XX_X
21._HUALLAGA_56
CCAG__CTGGCC____X_XX_XX_XX_XX_XX_X

Input profile: HUALLAGA_56 GC-01-030-2-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

1._HUALLAGA_56 GC-07-022-1-24

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._HUALLAGA_56 GC-01-030-2-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._HUALLAGA_56 GC-01-030-2-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

4._HUALLAGA_56 GC-01-030-2-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._HUALLAGA_56 GC-01-030-2-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._HUALLAGA_56 GC-01-030-2-07

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._HUALLAGA_56 GC-01-030-2-07

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 9
 Dapeng Zhang, 2016

9._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 10
 Dapeng Zhang, 2016

11._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 14
 Dapeng Zhang, 2016

12._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 15
 Dapeng Zhang, 2016

13._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 13 > F
 Dapeng Zhang, 2016

14._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 1 > FP
 Dapeng Zhang, 2016

15._HUALLAGA_56

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 4 > FP
 Dapeng Zhang, 2016

16._HUALLAGA_56

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 1 > FP
 Dapeng Zhang, 2016

17._HUALLAGA_56

97.4 %
38 shared markers

 Dapeng Zhang, 2016

18._HUALLAGA_56 GC-01-030-2-07

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 3 > FP
 Dapeng Zhang, 2016

20._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 16
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 2 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240