SNP Profiles of HUALLAGA-56   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAGCTCTCCCTGGTTCTTT
1._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
2._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
3._HUALLAGA_56
ATCCCCCC____CCCTGG_CT_
4._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
5._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
6._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
7._GC-07-022-1-24
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
8._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
9._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
10._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
11._GC-01-030-2-07
ATCCCCAAAGAGCTCTCCCCGGTTCTTT
12._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
13._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
14._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
15._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
16._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
17._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
18._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
19._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
20._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
21._HUALLAGA_56
ATCCCCAA____CCCCGG_CT_
 1516171819202122232425262728
_Input profile
ATAAAAGGCGCGCGCCAATTGGATAACG
1._HUALLAGA_56
___GG__CG____ATAA_
2._HUALLAGA_56
___GG__CG____ATAA_
3._HUALLAGA_56
___GG__CG____ATAA_
4._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
5._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
6._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
7._GC-07-022-1-24
AAAAAAGGGGCCGGCTAATTGGTTAACC
8._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
9._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
10._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
11._GC-01-030-2-07
AAAAAAGGGGCCGGCTAATTGGTTAACC
12._HUALLAGA_56
___GG__GG____TTAA_
13._HUALLAGA_56
___GG__GG____TTAA_
14._HUALLAGA_56
___GG__GG____TTAA_
15._HUALLAGA_56
___GG__GG____TTAA_
16._HUALLAGA_56
___GG__GG____TTAA_
17._HUALLAGA_56
___GG__GG____TTAA_
18._HUALLAGA_56
___GG__GG____TTAA_
19._HUALLAGA_56
___GG__GG____TTAA_
20._HUALLAGA_56
___GG__GG____TTAA_
21._HUALLAGA_56
___GG__GG____TTAA_
 2930313233343536373839404142
_Input profile
CCATTTGTGGCGCCAAGGGTTTAACCGG
1._HUALLAGA_56
CCAT___CG_AAGG__AA__
2._HUALLAGA_56
CCAT___CG_AAGG__AA__
3._HUALLAGA_56
CCAT___CG_AAGG__AA__
4._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
5._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
6._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
7._GC-07-022-1-24
CGAATTGGGG_CCAAGGGGTTAACCGG
8._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
9._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
10._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
11._GC-01-030-2-07
CGAATTGGGG_CCAAGGGGTTAACCGG
12._HUALLAGA_56
CGAA_____AAGG__AA__
13._HUALLAGA_56
CGAA_____AAGG__AA__
14._HUALLAGA_56
CGAA_____AAGG__AA__
15._HUALLAGA_56
CGAA_____AAGG__AA__
16._HUALLAGA_56
CGAA_____AAGG__AA__
17._HUALLAGA_56
CGAA_____AAGG__AA__
18._HUALLAGA_56
CGAA_____AAGG__AA__
19._HUALLAGA_56
CGAA_____AAGG__AA__
20._HUALLAGA_56
CGAA_____AAGG__AA__
21._HUALLAGA_56
CGAA___CC_AAGG__AG__
 4344454647484950515253545556
_Input profile
CCGGTTTTGGAAAACCACAGAAGTTTCT
1._HUALLAGA_56
___TT_________CT
2._HUALLAGA_56
___TT_________CT
3._HUALLAGA_56
___TT_________CT
4._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
5._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
6._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
7._GC-07-022-1-24
CCGGTTTTAAGGAACCCCGGAGGGTTCC
8._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
9._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
10._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
11._GC-01-030-2-07
CCGGTTTTAAGGAACCCCGGAGGGTTCC
12._HUALLAGA_56
___TT_________CC
13._HUALLAGA_56
___TT_________CC
14._HUALLAGA_56
___TT_________CC
15._HUALLAGA_56
___TT_________CC
16._HUALLAGA_56
___TT_________CC
17._HUALLAGA_56
___TT_________CC
18._HUALLAGA_56
___TT_________CC
19._HUALLAGA_56
___TT_________CC
20._HUALLAGA_56
___TT_________CC
21._HUALLAGA_56
___TT_________CC
 5758596061626364656667686970
_Input profile
CCTTGGCGCCTTCCCGGGCCAGGTGGAG
1._HUALLAGA_56
CC__CG_TTCCCG_CCAGGTGG_
2._HUALLAGA_56
CC__CG_TTCCCG_CCAGGTGG_
3._HUALLAGA_56
CC__CG_TTCCCG_CCAGGTGG_
4._GC-01-030-2-07
CCTTGGCGCCTT_GGGGCCAGGGTTAG
5._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
6._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
7._GC-07-022-1-24
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
8._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
9._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
10._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
11._GC-01-030-2-07
CCTTGGCGCCTTAAGGGGCCAGGGTTAG
12._HUALLAGA_56
CC__CG_TT_GG_CCAGGGTT_
13._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
14._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
15._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
16._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
17._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
18._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
19._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
20._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
21._HUALLAGA_56
CC__CG_TTAAGG_CCAGGGTT_
 7172737475767778798081828384
_Input profile
TTCCAACCACAGCCCCAAAACGCCAACC
1._HUALLAGA_56
__AACC_____AACG___
2._HUALLAGA_56
__AACC_____AACG___
3._HUALLAGA_56
__AACC_____AACG___
4._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
5._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
6._GC-01-030-2-07
TT_AACTACAACCCCAAACGGCCAAAA
7._GC-07-022-1-24
TTCGAACTACAACCCCAAACGGCCAAAA
8._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
9._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
10._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
11._GC-01-030-2-07
TTCGAACTACAACCCCAAACGGCCAAAA
12._HUALLAGA_56
__AACT_____ACGG___
13._HUALLAGA_56
__AACT_____ACGG___
14._HUALLAGA_56
__AACT_____ACGG___
15._HUALLAGA_56
__AACT_____ACGG___
16._HUALLAGA_56
__AACT_____ACGG___
17._HUALLAGA_56
__AACT_____ACGG___
18._HUALLAGA_56
__AACT_____ACGG___
19._HUALLAGA_56
__AACT_____ACGG___
20._HUALLAGA_56
__AACT_____ACGG___
21._HUALLAGA_56
__AACT_____ACGG___
 8586878889909192939495   
_Input profile
CTCTCCCCAGCCCTGGCCTTGGX_XX_XX_X
1._HUALLAGA_56
CTCTCC_AG_CTGGCC__X_XX_XX_X
2._HUALLAGA_56
CTCTCC_AG_CTGGCC__X_XX_XX_X
3._HUALLAGA_56
CTCTCC_AG_CTGGCC__X_XX_XX_X
4._GC-01-030-2-07
CCCTCC_AACCCTGTTTAAGGX_XX_XX_X
5._GC-01-030-2-07
CCCTCCTTAACCCTGT_AAGGX_XX_XX_X
6._GC-01-030-2-07
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
7._GC-07-022-1-24
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
8._GC-01-030-2-07
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
9._GC-01-030-2-07
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
10._GC-01-030-2-07
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
11._GC-01-030-2-07
CCCTCCTTAACCCTGTTTAAGGX_XX_XX_X
12._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
13._HUALLAGA_56
CCCTCC_AA_CTGT___X_XX_XX_X
14._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
15._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
16._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
17._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
18._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
19._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
20._HUALLAGA_56
CCCTCC_AA_CTGTTT__X_XX_XX_X
21._HUALLAGA_56
CCCTCC_AA_TTGTTT__X_XX_XX_X

Input profile: HUALLAGA_56 GC-01-030-2-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._HUALLAGA_56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 3 > FP
 Dapeng Zhang, 2016

2._HUALLAGA_56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 16
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._HUALLAGA_56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 2 > FP
 Dapeng Zhang, 2016

4._HUALLAGA_56 GC-01-030-2-07

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._HUALLAGA_56 GC-01-030-2-07

76.9 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._HUALLAGA_56 GC-01-030-2-07

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._HUALLAGA_56 GC-07-022-1-24

76.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._HUALLAGA_56 GC-01-030-2-07

76.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._HUALLAGA_56 GC-01-030-2-07

76.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

10._HUALLAGA_56 GC-01-030-2-07

76.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._HUALLAGA_56 GC-01-030-2-07

76.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 15
 Dapeng Zhang, 2016

13._HUALLAGA_56

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 1 > FP
 Dapeng Zhang, 2016

14._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 9
 Dapeng Zhang, 2016

15._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 10
 Dapeng Zhang, 2016

17._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 14
 Dapeng Zhang, 2016

18._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1207 13 > F
 Dapeng Zhang, 2016

19._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 1 > FP
 Dapeng Zhang, 2016

20._HUALLAGA_56

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7124 4 > FP
 Dapeng Zhang, 2016

21._HUALLAGA_56

68.8 %
40 shared markers

 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240