SNP Profiles of RB-39   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCACGGAATTCCTTTTGGTTTTTT
1._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
2._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
3._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
4._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
5._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
6._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
7._GC-01-042-2-19
AAAACCACGGAATTCC__TTGGTTTTTT
8._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
9._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
10._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
11._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
12._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
13._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
14._RB_39_[BRA]
AAAACCAC________TTTTGG__TT__
15._RB_39_[BRA]
AAAACCAC__________TTGG__TT__
16._GC-01-042-2-19
__AA__AC__AATTCCCTTTGG__TTTT
17._RB_39_[BRA]
__AA__AC________CTTTGG__TT__
18._RB_39_[BRA]
AAAACCAC__________CTGG__TT__
19._RB_39_[BRA]
AAAACCAC________CCCT____TT__
20._GC-01-042-2-19
AA__CCACGGGGCTCCCCCCGGTTCCTT
21._RB_39_[BRA]
AA__CCAC________CCCCGG__CC__
22._GC-01-42-2-19
AAAA__ACGGAA__GGAA__GGAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAGGGGCCCCCCAATTGGAAAAGG
1._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
2._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
3._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
4._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
5._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
6._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
7._GC-01-042-2-19
ATACAAGG__CC__CCAA__GGAAAAGG
8._RB_39_[BRA]
______GG____CC________AAAA__
9._RB_39_[BRA]
______GG____CC________AAAA__
10._RB_39_[BRA]
______GG____CC________AAAA__
11._RB_39_[BRA]
______GG____CC________AAAA__
12._RB_39_[BRA]
______GG____CC________AAAA__
13._RB_39_[BRA]
______GG____CC________AAAA__
14._RB_39_[BRA]
______GG____CC________AAAA__
15._RB_39_[BRA]
______GG______________AAAA__
16._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAATGG
17._RB_39_[BRA]
______GG____CC________AAAT__
18._RB_39_[BRA]
______GG____GG________AAAA__
19._RB_39_[BRA]
______GG____GG________AAAA__
20._GC-01-042-2-19
AACC__GGGGCCGGTTAATTGGAAAACC
21._RB_39_[BRA]
______GG____GG________AAAA__
22._GC-01-42-2-19
ATACAAGGCC__CCGGAAAAGGAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTGTGGGGCCAAGGGGGGAACCGG
1._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
2._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
3._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
4._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
5._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
6._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
7._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
8._RB_39_[BRA]
GGAA______GG__AAGG____AA____
9._RB_39_[BRA]
GGAA______GG__AAGG____AA____
10._RB_39_[BRA]
GGAA______GG__AAGG____AA____
11._RB_39_[BRA]
GGAA______GG__AAGG____AA____
12._RB_39_[BRA]
GGAA______GG__AAGG____AA____
13._RB_39_[BRA]
GGAA______GG__AAGG____AA____
14._RB_39_[BRA]
GGAA______GG__AAGG____AA____
15._RB_39_[BRA]
GGAA______GG__AAGG____AA____
16._GC-01-042-2-19
GGAATTGTAGGGCCAAGGGGGG__CC__
17._RB_39_[BRA]
GGAA______GG__AAGG__________
18._RB_39_[BRA]
GG________GG____GG____AA____
19._RB_39_[BRA]
GGAA______GG__AAGG____AA____
20._GC-01-042-2-19
GGAATTTTGGCCCCGGTTGGGGGGCCGG
21._RB_39_[BRA]
GGAA______CC__GGTT____GG____
22._GC-01-42-2-19
CCAAAAACGGCGCCAACCCCCCAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
1._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
2._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
3._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
4._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
5._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
6._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
7._GC-01-042-2-19
CCGGTTTTAAAAAGCC__GGAAGTTTCT
8._RB_39_[BRA]
______TT__________________CT
9._RB_39_[BRA]
______TT__________________CT
10._RB_39_[BRA]
______TT__________________CT
11._RB_39_[BRA]
______TT__________________CT
12._RB_39_[BRA]
______TT__________________CT
13._RB_39_[BRA]
______TT__________________CT
14._RB_39_[BRA]
______TT__________________CT
15._RB_39_[BRA]
______TT__________________CT
16._GC-01-042-2-19
CC__ATTTAA____CC__GGAA__TTCT
17._RB_39_[BRA]
______TT__________________CT
18._RB_39_[BRA]
______TT__________________TT
19._RB_39_[BRA]
______TT____________________
20._GC-01-042-2-19
CCGGTTTTAAGGAACCCCGGGGTTTTTT
21._RB_39_[BRA]
______TT__________________TT
22._GC-01-42-2-19
GGCC__AA__AAAAGG__GGAAACAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGGGCCCCCCGGGGACAAGGGGAA
1._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
2._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
3._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
4._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
5._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
6._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
7._GC-01-042-2-19
CCTTGGGGCCCC__GGGGACAAGGGGAA
8._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
9._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
10._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
11._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
12._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
13._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
14._RB_39_[BRA]
CC____GG__CCCCGG__ACAAGGGG__
15._RB_39_[BRA]
CC____GG__CC__GG__ACAAGGGG__
16._GC-01-042-2-19
CCTTGG__CCCCCCGGGGACAAGGGGAA
17._RB_39_[BRA]
CC________CCCCGG__ACAAGGGG__
18._RB_39_[BRA]
__________CCCCGG__CCAA__GG__
19._RB_39_[BRA]
CC________CCCCGG__CCAAGGGG__
20._GC-01-042-2-19
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
21._RB_39_[BRA]
CC____CC__CCAAGG__AAGGGGGG__
22._GC-01-42-2-19
GGAAGGCCGGGGCCGGGG__AACCCCAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCGAATTCCGGCCCCGGACCCCCAAAC
1._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
2._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
3._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
4._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
5._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
6._GC-01-042-2-19
CC__AATTCCGGCCCCGGACCCCCAAAC
7._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
8._RB_39_[BRA]
____AATT__________ACCC______
9._RB_39_[BRA]
____AATT__________ACCC______
10._RB_39_[BRA]
____AATT__________ACCC______
11._RB_39_[BRA]
____AATT__________ACCC______
12._RB_39_[BRA]
____AATT__________ACCC______
13._RB_39_[BRA]
____AATT__________ACCC______
14._RB_39_[BRA]
____AATT__________ACCC______
15._RB_39_[BRA]
____AATT__________ACCC______
16._GC-01-042-2-19
CCCG__TT__GGCCCCGGACCCCCAAAC
17._RB_39_[BRA]
______TT__________ACCC______
18._RB_39_[BRA]
____AATT__________CCCC______
19._RB_39_[BRA]
____AATT__________CCCC______
20._GC-01-042-2-19
CCCCAGCCAAGGCCCCGGAACCCCTTAA
21._RB_39_[BRA]
____AGCC__________AACC______
22._GC-01-42-2-19
______AACCGGCCCC__AC__GGAAAC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
1._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
2._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
3._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
4._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
5._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
6._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
7._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
8._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
9._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
10._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
11._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
12._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
13._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
14._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
15._RB_39_[BRA]
CCCCTT__AG__CTGGCC____X_XX_XX_X
16._GC-01-042-2-19
CCCCTT__AGCC__GGCCAA__X_XX_XX_X
17._RB_39_[BRA]
CCCCTT__AG____GGCC____X_XX_XX_X
18._RB_39_[BRA]
CCCC________TTGGCT____X_XX_XX_X
19._RB_39_[BRA]
CCCC____AG__TTGGCT____X_XX_XX_X
20._GC-01-042-2-19
CCCCCCCCGGCCCCTTTTAAGGX_XX_XX_X
21._RB_39_[BRA]
CCCCCC__GG__CCTTTT____X_XX_XX_X
22._GC-01-42-2-19
GGGG__AA____AGCCGGTTGGX_XX_XX_X

Input profile: RB_39_[BRA] GC-01-042-2-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

8._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

9._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._RB_39_[BRA]

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

18._RB_39_[BRA]

87.5 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

87.5 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240