SNP Profiles of RB-39   View Data

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 Key

 1234567891011121314
_Input profile
AAAACCACGGAATTCCTTTTGGTTTTTT
1._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
2._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
3._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
4._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
5._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
6._GC-01-042-2-19
AAAACCACGGAATTCCTTTTGGTTTTTT
7._GC-01-042-2-19
AAAACCACGGAATTCC_TTGGTTTTTT
8._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
9._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
10._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
11._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
12._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
13._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
14._RB_39_[BRA]
AAAACCAC____TTTTGG_TT_
15._RB_39_[BRA]
AAAACCAC_____TTGG_TT_
16._GC-01-042-2-19
_AA_AC_AATTCCCTTTGG_TTTT
17._RB_39_[BRA]
_AA_AC____CTTTGG_TT_
18._RB_39_[BRA]
AAAACCAC_____CTGG_TT_
19._RB_39_[BRA]
AAAACCAC____CCCT__TT_
20._GC-01-042-2-19
AA_CCACGGGGCTCCCCCCGGTTCCTT
21._RB_39_[BRA]
AA_CCAC____CCCCGG_CC_
22._GC-01-42-2-19
AAAA_ACGGAA_GGAA_GGAAAAAA
 1516171819202122232425262728
_Input profile
ATACAAGGGGCCCCCCAATTGGAAAAGG
1._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
2._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
3._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
4._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
5._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
6._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAAAGG
7._GC-01-042-2-19
ATACAAGG_CC_CCAA_GGAAAAGG
8._RB_39_[BRA]
___GG__CC____AAAA_
9._RB_39_[BRA]
___GG__CC____AAAA_
10._RB_39_[BRA]
___GG__CC____AAAA_
11._RB_39_[BRA]
___GG__CC____AAAA_
12._RB_39_[BRA]
___GG__CC____AAAA_
13._RB_39_[BRA]
___GG__CC____AAAA_
14._RB_39_[BRA]
___GG__CC____AAAA_
15._RB_39_[BRA]
___GG_______AAAA_
16._GC-01-042-2-19
ATACAAGGGGCCCCCCAATTGGAAATGG
17._RB_39_[BRA]
___GG__CC____AAAT_
18._RB_39_[BRA]
___GG__GG____AAAA_
19._RB_39_[BRA]
___GG__GG____AAAA_
20._GC-01-042-2-19
AACC_GGGGCCGGTTAATTGGAAAACC
21._RB_39_[BRA]
___GG__GG____AAAA_
22._GC-01-42-2-19
ATACAAGGCC_CCGGAAAAGGAAAACC
 2930313233343536373839404142
_Input profile
GGAATTGTGGGGCCAAGGGGGGAACCGG
1._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
2._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
3._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
4._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
5._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
6._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
7._GC-01-042-2-19
GGAATTGTGGGGCCAAGGGGGGAACCGG
8._RB_39_[BRA]
GGAA___GG_AAGG__AA__
9._RB_39_[BRA]
GGAA___GG_AAGG__AA__
10._RB_39_[BRA]
GGAA___GG_AAGG__AA__
11._RB_39_[BRA]
GGAA___GG_AAGG__AA__
12._RB_39_[BRA]
GGAA___GG_AAGG__AA__
13._RB_39_[BRA]
GGAA___GG_AAGG__AA__
14._RB_39_[BRA]
GGAA___GG_AAGG__AA__
15._RB_39_[BRA]
GGAA___GG_AAGG__AA__
16._GC-01-042-2-19
GGAATTGTAGGGCCAAGGGGGG_CC_
17._RB_39_[BRA]
GGAA___GG_AAGG_____
18._RB_39_[BRA]
GG____GG__GG__AA__
19._RB_39_[BRA]
GGAA___GG_AAGG__AA__
20._GC-01-042-2-19
GGAATTTTGGCCCCGGTTGGGGGGCCGG
21._RB_39_[BRA]
GGAA___CC_GGTT__GG__
22._GC-01-42-2-19
CCAAAAACGGCGCCAACCCCCCAAGGGG
 4344454647484950515253545556
_Input profile
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
1._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
2._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
3._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
4._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
5._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
6._GC-01-042-2-19
CCGGTTTTAAAAAGCCAAGGAAGTTTCT
7._GC-01-042-2-19
CCGGTTTTAAAAAGCC_GGAAGTTTCT
8._RB_39_[BRA]
___TT_________CT
9._RB_39_[BRA]
___TT_________CT
10._RB_39_[BRA]
___TT_________CT
11._RB_39_[BRA]
___TT_________CT
12._RB_39_[BRA]
___TT_________CT
13._RB_39_[BRA]
___TT_________CT
14._RB_39_[BRA]
___TT_________CT
15._RB_39_[BRA]
___TT_________CT
16._GC-01-042-2-19
CC_ATTTAA__CC_GGAA_TTCT
17._RB_39_[BRA]
___TT_________CT
18._RB_39_[BRA]
___TT_________TT
19._RB_39_[BRA]
___TT__________
20._GC-01-042-2-19
CCGGTTTTAAGGAACCCCGGGGTTTTTT
21._RB_39_[BRA]
___TT_________TT
22._GC-01-42-2-19
GGCC_AA_AAAAGG_GGAAACAGAG
 5758596061626364656667686970
_Input profile
CCTTGGGGCCCCCCGGGGACAAGGGGAA
1._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
2._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
3._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
4._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
5._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
6._GC-01-042-2-19
CCTTGGGGCCCCCCGGGGACAAGGGGAA
7._GC-01-042-2-19
CCTTGGGGCCCC_GGGGACAAGGGGAA
8._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
9._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
10._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
11._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
12._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
13._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
14._RB_39_[BRA]
CC__GG_CCCCGG_ACAAGGGG_
15._RB_39_[BRA]
CC__GG_CC_GG_ACAAGGGG_
16._GC-01-042-2-19
CCTTGG_CCCCCCGGGGACAAGGGGAA
17._RB_39_[BRA]
CC____CCCCGG_ACAAGGGG_
18._RB_39_[BRA]
_____CCCCGG_CCAA_GG_
19._RB_39_[BRA]
CC____CCCCGG_CCAAGGGG_
20._GC-01-042-2-19
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
21._RB_39_[BRA]
CC__CC_CCAAGG_AAGGGGGG_
22._GC-01-42-2-19
GGAAGGCCGGGGCCGGGG_AACCCCAA
 7172737475767778798081828384
_Input profile
CCCGAATTCCGGCCCCGGACCCCCAAAC
1._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
2._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
3._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
4._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
5._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
6._GC-01-042-2-19
CC_AATTCCGGCCCCGGACCCCCAAAC
7._GC-01-042-2-19
CCCGAATTCCGGCCCCGGACCCCCAAAC
8._RB_39_[BRA]
__AATT_____ACCC___
9._RB_39_[BRA]
__AATT_____ACCC___
10._RB_39_[BRA]
__AATT_____ACCC___
11._RB_39_[BRA]
__AATT_____ACCC___
12._RB_39_[BRA]
__AATT_____ACCC___
13._RB_39_[BRA]
__AATT_____ACCC___
14._RB_39_[BRA]
__AATT_____ACCC___
15._RB_39_[BRA]
__AATT_____ACCC___
16._GC-01-042-2-19
CCCG_TT_GGCCCCGGACCCCCAAAC
17._RB_39_[BRA]
___TT_____ACCC___
18._RB_39_[BRA]
__AATT_____CCCC___
19._RB_39_[BRA]
__AATT_____CCCC___
20._GC-01-042-2-19
CCCCAGCCAAGGCCCCGGAACCCCTTAA
21._RB_39_[BRA]
__AGCC_____AACC___
22._GC-01-42-2-19
___AACCGGCCCC_AC_GGAAAC
 8586878889909192939495   
_Input profile
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
1._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
2._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
3._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
4._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
5._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
6._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
7._GC-01-042-2-19
CCCCTTTTAGCCCTGGCCAAGGX_XX_XX_X
8._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
9._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
10._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
11._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
12._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
13._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
14._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
15._RB_39_[BRA]
CCCCTT_AG_CTGGCC__X_XX_XX_X
16._GC-01-042-2-19
CCCCTT_AGCC_GGCCAA_X_XX_XX_X
17._RB_39_[BRA]
CCCCTT_AG__GGCC__X_XX_XX_X
18._RB_39_[BRA]
CCCC____TTGGCT__X_XX_XX_X
19._RB_39_[BRA]
CCCC__AG_TTGGCT__X_XX_XX_X
20._GC-01-042-2-19
CCCCCCCCGGCCCCTTTTAAGGX_XX_XX_X
21._RB_39_[BRA]
CCCCCC_GG_CCTTTT__X_XX_XX_X
22._GC-01-42-2-19
GGGG_AA__AGCCGGTTGGX_XX_XX_X

Input profile: RB_39_[BRA] GC-01-042-2-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

8._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

9._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._RB_39_[BRA]

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

18._RB_39_[BRA]

87.5 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

87.5 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240