SNP Profiles of POUND 25 /A View Data

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_Input profile	AA	AC	AA	TT	CC	CT	TT	GG	TT	TT	AT	AC	AA	GG
1._RB_39_[BRA]___	AA	AC	__	__	__	CT	TT	GG	TT	__	__	__	__	GG
2._RB_39_[BRA]___	AA	AC	__	__	__	__	TT	GG	TT	__	__	__	__	GG
3._RB_39_[BRA]___	AA	AC	AA	TT	CC	__	TT	GG	TT	TT	AT	AC	AA	GG
4._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
5._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
6._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
7._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
8._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
9._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
10._RB_39_[BRA]___	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
11._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
12._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
13._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
14._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
15._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
16._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
17._RB_39_[BRA]___	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
18._RB_39_[BRA]___	AA	AC	__	__	__	CC	CT	__	TT	__	__	__	__	GG
19._RB_39_[BRA]___	AA	AC	__	__	__	__	CT	GG	TT	__	__	__	__	GG
20._RB_39_[BRA]___	__	AC	GG	CT	CC	CC	CC	GG	CC	TT	AA	CC	__	GG
21._RB_39_[BRA]___	__	AC	__	__	__	CC	CC	GG	CC	__	__	__	__	GG
22._RB_39_[BRA]___	AA	AC	AA	__	GG	AA	__	GG	AA	AA	AT	AC	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	CC	AA	TT	GG	AA	AT	GG	GG	AA	TT	GT
1._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AT	__	GG	AA	__	__
2._RB_39_[BRA]___	__	__	__	__	__	__	__	AA	AA	__	GG	AA	__	__
3._RB_39_[BRA]___	__	CC	__	CC	AA	__	GG	AA	AA	GG	GG	AA	TT	GT
4._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
5._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
6._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
7._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
8._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
9._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
10._RB_39_[BRA]___	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
11._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
12._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
13._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
14._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
15._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
16._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
17._RB_39_[BRA]___	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
18._RB_39_[BRA]___	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__	__
19._RB_39_[BRA]___	__	__	GG	__	__	__	__	AA	AA	__	GG	__	__	__
20._RB_39_[BRA]___	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT	TT
21._RB_39_[BRA]___	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__	__
22._RB_39_[BRA]___	CC	__	CC	GG	AA	AA	GG	AA	AA	CC	CC	AA	AA	AC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	GG	CC	AA	GG	GG	GG	CC	CC	AT	TT	AA	CC	GG
1._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
2._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
3._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
4._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
5._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
6._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
7._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
8._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
9._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
10._RB_39_[BRA]___	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
11._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
12._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
13._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
14._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
15._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
16._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
17._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
18._RB_39_[BRA]___	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
19._RB_39_[BRA]___	__	GG	__	__	GG	__	__	__	__	__	TT	__	__	__
20._RB_39_[BRA]___	GG	CC	CC	GG	TT	GG	GG	CC	CC	TT	TT	AA	CC	GG
21._RB_39_[BRA]___	__	CC	__	GG	TT	__	__	__	__	__	TT	__	__	__
22._RB_39_[BRA]___	GG	CG	CC	AA	CC	CC	CC	GG	GG	__	AA	__	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
1._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
2._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	__	GG	__	AC	AA	GG
3._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	__	GG	GG	AC	AA	GG
4._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
5._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
6._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
7._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
8._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
9._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
10._RB_39_[BRA]___	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
11._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
12._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
13._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
14._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
15._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
16._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
17._RB_39_[BRA]___	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
18._RB_39_[BRA]___	__	__	__	CC	__	__	__	CC	CC	GG	__	CC	AA	GG
19._RB_39_[BRA]___	__	__	TT	__	__	__	__	CC	CC	GG	__	CC	AA	__
20._RB_39_[BRA]___	GG	TT	TT	CC	TT	GG	CC	CC	AA	GG	GG	AA	GG	GG
21._RB_39_[BRA]___	__	__	TT	CC	__	__	__	CC	AA	GG	__	AA	GG	GG
22._RB_39_[BRA]___	AA	AG	AG	GG	AA	GG	GG	GG	CC	GG	GG	__	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
1._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
2._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
3._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
4._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
5._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
6._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
7._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
8._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
9._RB_39_[BRA]___	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
10._RB_39_[BRA]___	GG	AA	CC	__	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
11._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
12._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
13._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
14._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
15._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
16._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
17._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
18._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	CC	CC	__	__	__
19._RB_39_[BRA]___	GG	__	__	__	TT	__	__	__	__	CC	CC	__	__	__
20._RB_39_[BRA]___	GG	AA	CC	CC	CC	GG	CC	CC	GG	AA	CC	CC	TT	AA
21._RB_39_[BRA]___	GG	__	__	__	CC	__	__	__	__	AA	CC	__	__	__
22._RB_39_[BRA]___	CC	AA	__	__	AA	GG	CC	CC	__	AC	__	GG	AA	AC

	71	72	73	74	75	76	77	78
_Input profile	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
1._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
2._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
3._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
4._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
5._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
6._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
7._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
8._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
9._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
10._RB_39_[BRA]___	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
11._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
12._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
13._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
14._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
15._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
16._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
17._RB_39_[BRA]___	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
18._RB_39_[BRA]___	CC	CC	__	AG	__	GG	CT	__	X_X	X_X	X_X	X_X	X_X	X_X
19._RB_39_[BRA]___	CC	CC	__	__	__	GG	CT	__	X_X	X_X	X_X	X_X	X_X	X_X
20._RB_39_[BRA]___	CC	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X
21._RB_39_[BRA]___	CC	CC	CC	GG	__	TT	TT	__	X_X	X_X	X_X	X_X	X_X	X_X
22._RB_39_[BRA]___	GG	GG	__	__	__	CC	GG	TT	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA] GC-01-042-2-19

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._RB_39_[BRA]

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

2._RB_39_[BRA]

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

3._RB_39_[BRA] GC-01-042-2-19

97.9 %
73 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

4._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

5._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._RB_39_[BRA] GC-01-042-2-19

97.4 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

11._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

12._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

13._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

14._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

15._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

16._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

17._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

18._RB_39_[BRA]

87.1 %
31 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._RB_39_[BRA]

85.2 %
27 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

68.4 %
76 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

54.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

46.9 %
65 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1350	2	TcSNP591	3	TcSNP418	4	TcSNP702	5	TcSNP1096
6	TcSNP1060	7	TcSNP1165	8	TcSNP429	9	TcSNP891	10	TcSNP122
11	TcSNP316	12	TcSNP521	13	TcSNP860	14	TcSNP1062	15	TcSNP836
16	TcSNP878	17	TcSNP929	18	TcSNP413	19	TcSNP653	20	TcSNP1149
21	TcSNP174	22	TcSNP32	23	TcSNP372	24	TcSNP448	25	TcSNP872
26	TcSNP953	27	TcSNP1034	28	TcSNP1175	29	TcSNP1111	30	TcSNP577
31	TcSNP90	32	TcSNP998	33	TcSNP150	34	TcSNP28	35	TcSNP751
36	TcSNP602	37	TcSNP894	38	TcSNP1126	39	TcSNP1270	40	TcSNP606
41	TcSNP944	42	TcSNP1383	43	TcSNP547	44	TcSNP1309	45	TcSNP151
46	TcSNP1520	47	TcSNP799	48	TcSNP899	49	TcSNP1439	50	TcSNP1442
51	TcSNP193	52	TcSNP25	53	TcSNP364	54	TcSNP144	55	TcSNP230
56	TcSNP560	57	TcSNP723	58	TcSNP731	59	TcSNP701	60	TcSNP1041
61	TcSNP917	62	Tcm003s07402719	63	Tcm001s00947643	64	Tcm006s26664133	65	Tcm002s20575712
66	TcSNP529	67	TcSNP1458	68	TcSNP60	69	TcSNP430	70	TcSNP823
71	TcSNP619	72	TcSNP994	73	TcSNP1144	74	TcSNP469	75	TcSNP999
76	TcSNP1253	77	TcSNP1414	78	TcSNP154