SNP Profiles of RB 39 [BRA] View Data

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_Input profile	AA	AC	AA	TT	CC	CT	TT	GG	TT	TT	AT	AC	AA	GG
1._RB_39_[BRA]	AA	AC	__	__	__	CT	TT	GG	TT	__	__	__	__	GG
2._RB_39_[BRA]	AA	AC	__	__	__	__	TT	GG	TT	__	__	__	__	GG
3._GC-01-042-2-19	AA	AC	AA	TT	CC	__	TT	GG	TT	TT	AT	AC	AA	GG
4._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
5._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
6._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
7._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
8._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
9._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
10._GC-01-042-2-19	AA	AC	AA	TT	CC	TT	TT	GG	TT	TT	AT	AC	AA	GG
11._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
12._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
13._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
14._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
15._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
16._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
17._RB_39_[BRA]	AA	AC	__	__	__	TT	TT	GG	TT	__	__	__	__	GG
18._RB_39_[BRA]	AA	AC	__	__	__	CC	CT	__	TT	__	__	__	__	GG
19._RB_39_[BRA]	AA	AC	__	__	__	__	CT	GG	TT	__	__	__	__	GG
20._GC-01-042-2-19	__	AC	GG	CT	CC	CC	CC	GG	CC	TT	AA	CC	__	GG
21._RB_39_[BRA]	__	AC	__	__	__	CC	CC	GG	CC	__	__	__	__	GG
22._GC-01-42-2-19	AA	AC	AA	__	GG	AA	__	GG	AA	AA	AT	AC	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	CC	AA	TT	GG	AA	AT	GG	GG	AA	TT	GT
1._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AT	__	GG	AA	__	__
2._RB_39_[BRA]	__	__	__	__	__	__	__	AA	AA	__	GG	AA	__	__
3._GC-01-042-2-19	__	CC	__	CC	AA	__	GG	AA	AA	GG	GG	AA	TT	GT
4._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
5._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
6._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
7._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
8._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
9._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
10._GC-01-042-2-19	GG	CC	CC	CC	AA	TT	GG	AA	AA	GG	GG	AA	TT	GT
11._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
12._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
13._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
14._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
15._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
16._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
17._RB_39_[BRA]	__	__	CC	__	__	__	__	AA	AA	__	GG	AA	__	__
18._RB_39_[BRA]	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__	__
19._RB_39_[BRA]	__	__	GG	__	__	__	__	AA	AA	__	GG	__	__	__
20._GC-01-042-2-19	GG	CC	GG	TT	AA	TT	GG	AA	AA	CC	GG	AA	TT	TT
21._RB_39_[BRA]	__	__	GG	__	__	__	__	AA	AA	__	GG	AA	__	__
22._GC-01-42-2-19	CC	__	CC	GG	AA	AA	GG	AA	AA	CC	CC	AA	AA	AC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	GG	CC	AA	GG	GG	GG	CC	CC	AT	TT	AA	CC	GG
1._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
2._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
3._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
4._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
5._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
6._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
7._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
8._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
9._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
10._GC-01-042-2-19	GG	GG	CC	AA	GG	GG	GG	CC	CC	TT	TT	AA	CC	GG
11._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
12._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
13._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
14._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
15._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
16._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
17._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
18._RB_39_[BRA]	__	GG	__	AA	GG	__	__	__	__	__	TT	__	__	__
19._RB_39_[BRA]	__	GG	__	__	GG	__	__	__	__	__	TT	__	__	__
20._GC-01-042-2-19	GG	CC	CC	GG	TT	GG	GG	CC	CC	TT	TT	AA	CC	GG
21._RB_39_[BRA]	__	CC	__	GG	TT	__	__	__	__	__	TT	__	__	__
22._GC-01-42-2-19	GG	CG	CC	AA	CC	CC	CC	GG	GG	__	AA	__	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
1._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
2._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	__	GG	__	AC	AA	GG
3._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	__	GG	GG	AC	AA	GG
4._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
5._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
6._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
7._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
8._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
9._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
10._GC-01-042-2-19	AA	TT	CT	CC	TT	GG	CC	CC	CC	GG	GG	AC	AA	GG
11._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
12._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
13._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
14._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
15._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
16._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
17._RB_39_[BRA]	__	__	CT	CC	__	__	__	CC	CC	GG	__	AC	AA	GG
18._RB_39_[BRA]	__	__	__	CC	__	__	__	CC	CC	GG	__	CC	AA	GG
19._RB_39_[BRA]	__	__	TT	__	__	__	__	CC	CC	GG	__	CC	AA	__
20._GC-01-042-2-19	GG	TT	TT	CC	TT	GG	CC	CC	AA	GG	GG	AA	GG	GG
21._RB_39_[BRA]	__	__	TT	CC	__	__	__	CC	AA	GG	__	AA	GG	GG
22._GC-01-42-2-19	AA	AG	AG	GG	AA	GG	GG	GG	CC	GG	GG	__	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
1._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
2._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
3._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
4._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
5._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
6._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
7._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
8._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
9._GC-01-042-2-19	GG	AA	CC	CG	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
10._GC-01-042-2-19	GG	AA	CC	__	TT	GG	CC	CC	GG	AC	CC	CC	AA	AC
11._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
12._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
13._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
14._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
15._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
16._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
17._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	AC	CC	__	__	__
18._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	CC	CC	__	__	__
19._RB_39_[BRA]	GG	__	__	__	TT	__	__	__	__	CC	CC	__	__	__
20._GC-01-042-2-19	GG	AA	CC	CC	CC	GG	CC	CC	GG	AA	CC	CC	TT	AA
21._RB_39_[BRA]	GG	__	__	__	CC	__	__	__	__	AA	CC	__	__	__
22._GC-01-42-2-19	CC	AA	__	__	AA	GG	CC	CC	__	AC	__	GG	AA	AC

	71	72	73	74	75	76	77	78
_Input profile	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
1._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
2._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-042-2-19	CC	CC	TT	AG	CC	GG	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
11._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
12._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
13._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
14._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
15._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
16._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
17._RB_39_[BRA]	CC	CC	TT	AG	__	GG	CC	__	X_X	X_X	X_X	X_X	X_X	X_X
18._RB_39_[BRA]	CC	CC	__	AG	__	GG	CT	__	X_X	X_X	X_X	X_X	X_X	X_X
19._RB_39_[BRA]	CC	CC	__	__	__	GG	CT	__	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-042-2-19	CC	CC	CC	GG	CC	TT	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X
21._RB_39_[BRA]	CC	CC	CC	GG	__	TT	TT	__	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-01-42-2-19	GG	GG	__	__	__	CC	GG	TT	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA] GC-01-042-2-19

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._RB_39_[BRA]

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

2._RB_39_[BRA]

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

3._RB_39_[BRA] GC-01-042-2-19

97.9 %
73 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

4._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

5._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._RB_39_[BRA] GC-01-042-2-19

97.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._RB_39_[BRA] GC-01-042-2-19

97.4 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

11._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

12._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

13._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

14._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

15._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

16._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

17._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

18._RB_39_[BRA]

87.1 %
31 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._RB_39_[BRA]

85.2 %
27 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

68.4 %
76 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

54.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

46.9 %
65 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1350	2	TcSNP591	3	TcSNP418	4	TcSNP702	5	TcSNP1096
6	TcSNP1060	7	TcSNP1165	8	TcSNP429	9	TcSNP891	10	TcSNP122
11	TcSNP316	12	TcSNP521	13	TcSNP860	14	TcSNP1062	15	TcSNP836
16	TcSNP878	17	TcSNP929	18	TcSNP413	19	TcSNP653	20	TcSNP1149
21	TcSNP174	22	TcSNP32	23	TcSNP372	24	TcSNP448	25	TcSNP872
26	TcSNP953	27	TcSNP1034	28	TcSNP1175	29	TcSNP1111	30	TcSNP577
31	TcSNP90	32	TcSNP998	33	TcSNP150	34	TcSNP28	35	TcSNP751
36	TcSNP602	37	TcSNP894	38	TcSNP1126	39	TcSNP1270	40	TcSNP606
41	TcSNP944	42	TcSNP1383	43	TcSNP547	44	TcSNP1309	45	TcSNP151
46	TcSNP1520	47	TcSNP799	48	TcSNP899	49	TcSNP1439	50	TcSNP1442
51	TcSNP193	52	TcSNP25	53	TcSNP364	54	TcSNP144	55	TcSNP230
56	TcSNP560	57	TcSNP723	58	TcSNP731	59	TcSNP701	60	TcSNP1041
61	TcSNP917	62	Tcm003s07402719	63	Tcm001s00947643	64	Tcm006s26664133	65	Tcm002s20575712
66	TcSNP529	67	TcSNP1458	68	TcSNP60	69	TcSNP430	70	TcSNP823
71	TcSNP619	72	TcSNP994	73	TcSNP1144	74	TcSNP469	75	TcSNP999
76	TcSNP1253	77	TcSNP1414	78	TcSNP154