SNP Profiles of POUND 25 /A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCACGGAATTCCTTGGTTTTTTAT
1._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
2._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
3._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
4._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
5._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
6._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
7._RB_39_[BRA]___
AAAACCACGGAATTCCTTGGTTTTTTAT
8._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
9._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
10._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
11._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
12._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
13._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
14._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
15._RB_39_[BRA]___
AAAACCAC________TTGG__TT____
16._RB_39_[BRA]___
__AA__AC________TTGG__TT____
17._RB_39_[BRA]___
__AA__AC__AATTCCTTGG__TTTTAT
18._RB_39_[BRA]___
AAAACCAC________CT____TT____
19._RB_39_[BRA]___
AAAACCAC________CTGG__TT____
20._RB_39_[BRA]___
AA__CCACGGGGCTCCCCGGTTCCTTAA
21._RB_39_[BRA]___
AA__CCAC________CCGG__CC____
22._RB_39_[BRA]___
AAAA__ACGGAA__GG__GGAAAAAAAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAGGCCCCAAGGAAAAGGGGAATTGT
1._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
2._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
3._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
4._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
5._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
6._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
7._RB_39_[BRA]___
ACAAGGCCCCAAGGAAAAGGGGAATTGT
8._RB_39_[BRA]___
____GG________AAAA__GGAA____
9._RB_39_[BRA]___
____GG________AAAA__GGAA____
10._RB_39_[BRA]___
____GG________AAAA__GGAA____
11._RB_39_[BRA]___
____GG________AAAA__GGAA____
12._RB_39_[BRA]___
____GG________AAAA__GGAA____
13._RB_39_[BRA]___
____GG________AAAA__GGAA____
14._RB_39_[BRA]___
____GG________AAAA__GGAA____
15._RB_39_[BRA]___
____GG________AAAA__GGAA____
16._RB_39_[BRA]___
____GG________AAAT__GGAA____
17._RB_39_[BRA]___
ACAAGGCCCCAAGGAAATGGGGAATTGT
18._RB_39_[BRA]___
____GG________AAAA__GGAA____
19._RB_39_[BRA]___
____GG________AAAA__GG______
20._RB_39_[BRA]___
CC__GGCCTTAAGGAAAACCGGAATTTT
21._RB_39_[BRA]___
____GG________AAAA__GGAA____
22._RB_39_[BRA]___
ACAAGG__GGAAGGAAAACCCCAAAAAC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGGGCCAAGGGGGGAACCGGCCGGTTTT
1._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
2._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
3._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
4._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
5._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
6._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
7._RB_39_[BRA]___
GGGGCCAAGGGGGGAACCGGCCGGTTTT
8._RB_39_[BRA]___
__GG__AAGG____AA__________TT
9._RB_39_[BRA]___
__GG__AAGG____AA__________TT
10._RB_39_[BRA]___
__GG__AAGG____AA__________TT
11._RB_39_[BRA]___
__GG__AAGG____AA__________TT
12._RB_39_[BRA]___
__GG__AAGG____AA__________TT
13._RB_39_[BRA]___
__GG__AAGG____AA__________TT
14._RB_39_[BRA]___
__GG__AAGG____AA__________TT
15._RB_39_[BRA]___
__GG__AAGG____AA__________TT
16._RB_39_[BRA]___
__GG__AAGG________________TT
17._RB_39_[BRA]___
AGGGCCAAGGGGGG__CC__CC__ATTT
18._RB_39_[BRA]___
__GG__AAGG____AA__________TT
19._RB_39_[BRA]___
__GG____GG____AA__________TT
20._RB_39_[BRA]___
GGCCCCGGTTGGGGGGCCGGCCGGTTTT
21._RB_39_[BRA]___
__CC__GGTT____GG__________TT
22._RB_39_[BRA]___
GGCGCCAACCCCCCAAGGGGGGCC__AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
1._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
2._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
3._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
4._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
5._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
6._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
7._RB_39_[BRA]___
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
8._RB_39_[BRA]___
________________CTCC____GG__
9._RB_39_[BRA]___
________________CTCC____GG__
10._RB_39_[BRA]___
________________CTCC____GG__
11._RB_39_[BRA]___
________________CTCC____GG__
12._RB_39_[BRA]___
________________CTCC____GG__
13._RB_39_[BRA]___
________________CTCC____GG__
14._RB_39_[BRA]___
________________CTCC____GG__
15._RB_39_[BRA]___
________________CTCC____GG__
16._RB_39_[BRA]___
________________CTCC________
17._RB_39_[BRA]___
AA____CCGGAA__TTCTCCTTGG__CC
18._RB_39_[BRA]___
__________________CC________
19._RB_39_[BRA]___
________________TT__________
20._RB_39_[BRA]___
AAGGAACCGGGGTTTTTTCCTTGGCCCC
21._RB_39_[BRA]___
________________TTCC____CC__
22._RB_39_[BRA]___
__AAAAGGGGAAACAGAGGGAAGGCCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGACAAGGGGAACCCGAATTCCGG
1._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
2._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
3._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
4._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
5._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
6._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCGAATTCCGG
7._RB_39_[BRA]___
CCGGGGACAAGGGGAACC__AATTCCGG
8._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
9._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
10._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
11._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
12._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
13._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
14._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
15._RB_39_[BRA]___
CCGG__ACAAGGGG______AATT____
16._RB_39_[BRA]___
CCGG__ACAAGGGG________TT____
17._RB_39_[BRA]___
CCGGGGACAAGGGGAACCCG__TT__GG
18._RB_39_[BRA]___
CCGG__CCAAGGGG______AATT____
19._RB_39_[BRA]___
CCGG__CCAA__GG______AATT____
20._RB_39_[BRA]___
CCGGGGAAGGGGGGAACCCCAGCCAAGG
21._RB_39_[BRA]___
CCGG__AAGGGGGG______AGCC____
22._RB_39_[BRA]___
GGGGGG__AACCCCAA______AACCGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCGGACCCCCAAACCCCCTTTTAGCC
1._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
2._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
3._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
4._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
5._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
6._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
7._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTTTTAGCC
8._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
9._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
10._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
11._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
12._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
13._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
14._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
15._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
16._RB_39_[BRA]___
______ACCC______CCCCTT__AG__
17._RB_39_[BRA]___
CCCCGGACCCCCAAACCCCCTT__AGCC
18._RB_39_[BRA]___
______CCCC______CCCC____AG__
19._RB_39_[BRA]___
______CCCC______CCCC________
20._RB_39_[BRA]___
CCCCGGAACCCCTTAACCCCCCCCGGCC
21._RB_39_[BRA]___
______AACC______CCCCCC__GG__
22._RB_39_[BRA]___
CCCC__AC__GGAAACGGGG__AA____
 85 86 87 88 89          
_Input profile
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RB_39_[BRA]___
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RB_39_[BRA]___
CTGGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RB_39_[BRA]___
__GGCC____X_XX_XX_XX_XX_XX_XX_XX_XX_X
17._RB_39_[BRA]___
__GGCCAA__X_XX_XX_XX_XX_XX_XX_XX_XX_X
18._RB_39_[BRA]___
TTGGCT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RB_39_[BRA]___
TTGGCT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
20._RB_39_[BRA]___
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RB_39_[BRA]___
CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_XX_X
22._RB_39_[BRA]___
AGCCGGTTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA] GC-01-042-2-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

1._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

9._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

16._RB_39_[BRA]

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

17._RB_39_[BRA] GC-01-042-2-19

97.9 %
73 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._RB_39_[BRA]

92.4 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

90 %
30 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

69 %
87 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

58.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

50 %
74 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP878 19TcSNP413 20TcSNP653
21TcSNP174 22TcSNP32 23TcSNP372 24TcSNP448 25TcSNP872
26TcSNP953 27TcSNP1034 28TcSNP1175 29TcSNP1111 30TcSNP577
31TcSNP90 32TcSNP998 33TcSNP150 34TcSNP28 35TcSNP751
36TcSNP1484 37TcSNP602 38TcSNP561 39TcSNP894 40TcSNP1063
41TcSNP1126 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP689
46TcSNP944 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP25 59TcSNP364 60TcSNP144
61TcSNP230 62TcSNP560 63TcSNP723 64TcSNP731 65TcSNP701
66TcSNP1041 67TcSNP645 68TcSNP917 69Tcm003s01336581 70Tcm003s07402719
71Tcm001s00947643 72Tcm006s26664133 73Tcm002s20575712 74TcSNP529 75TcSNP1458
76TcSNP60 77TcSNP430 78TcSNP823 79TcSNP619 80TcSNP994
81TcSNP1144 82TcSNP1156 83TcSNP469 84TcSNP999 85TcSNP242
86TcSNP1253 87TcSNP1414 88TcSNP154 89TcSNP240