SNP Profiles of RB 39 [BRA]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._RB_39_[BRA]
AACCAC________CCCCGG__CC____
2._GC-01-042-2-19
AACCACGGAATTCC__TTGGTTTTTTAT
3._GC-01-042-2-19
____AC__AATTCCCTTTGG__TTTTAT
4._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
5._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
6._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
7._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
8._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
9._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
10._GC-01-042-2-19
AACCACGGAATTCCTTTTGGTTTTTTAT
11._RB_39_[BRA]
AACCAC________CCCT____TT____
12._RB_39_[BRA]
AACCAC__________CTGG__TT____
13._RB_39_[BRA]
AACCAC__________TTGG__TT____
14._RB_39_[BRA]
____AC________CTTTGG__TT____
15._RB_39_[BRA]
AACCAC________TTTTGG__TT____
16._RB_39_[BRA]
AACCAC________TTTTGG__TT____
17._RB_39_[BRA]
AACCAC________TTTTGG__TT____
18._RB_39_[BRA]
AACCAC________TTTTGG__TT____
19._RB_39_[BRA]
AACCAC________TTTTGG__TT____
20._RB_39_[BRA]
AACCAC________TTTTGG__TT____
21._RB_39_[BRA]
AACCAC________TTTTGG__TT____
22._GC-01-42-2-19
AA__ACGGAA__GGAA__GGAAAAAAAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGAAAACCGGAA
1._RB_39_[BRA]
__GG____GG________AAAA__GGAA
2._GC-01-042-2-19
ACGG__CC__CCAA__GGAAAAGGGGAA
3._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAATGGGGAA
4._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
5._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
6._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
7._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
8._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
9._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
10._GC-01-042-2-19
ACGGGGCCCCCCAATTGGAAAAGGGGAA
11._RB_39_[BRA]
__GG____GG________AAAA__GGAA
12._RB_39_[BRA]
__GG____GG________AAAA__GG__
13._RB_39_[BRA]
__GG______________AAAA__GGAA
14._RB_39_[BRA]
__GG____CC________AAAT__GGAA
15._RB_39_[BRA]
__GG____CC________AAAA__GGAA
16._RB_39_[BRA]
__GG____CC________AAAA__GGAA
17._RB_39_[BRA]
__GG____CC________AAAA__GGAA
18._RB_39_[BRA]
__GG____CC________AAAA__GGAA
19._RB_39_[BRA]
__GG____CC________AAAA__GGAA
20._RB_39_[BRA]
__GG____CC________AAAA__GGAA
21._RB_39_[BRA]
__GG____CC________AAAA__GGAA
22._GC-01-42-2-19
ACGGCC__CCGGAAAAGGAAAACCCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._RB_39_[BRA]
______CC__GGTT____GG________
2._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
3._GC-01-042-2-19
TTGTAGGGCCAAGGGGGG__CC__CC__
4._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
5._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
6._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
7._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
8._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
9._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
10._GC-01-042-2-19
TTGTGGGGCCAAGGGGGGAACCGGCCGG
11._RB_39_[BRA]
______GG__AAGG____AA________
12._RB_39_[BRA]
______GG____GG____AA________
13._RB_39_[BRA]
______GG__AAGG____AA________
14._RB_39_[BRA]
______GG__AAGG______________
15._RB_39_[BRA]
______GG__AAGG____AA________
16._RB_39_[BRA]
______GG__AAGG____AA________
17._RB_39_[BRA]
______GG__AAGG____AA________
18._RB_39_[BRA]
______GG__AAGG____AA________
19._RB_39_[BRA]
______GG__AAGG____AA________
20._RB_39_[BRA]
______GG__AAGG____AA________
21._RB_39_[BRA]
______GG__AAGG____AA________
22._GC-01-42-2-19
AAACGGCGCCAACCCCCCAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._RB_39_[BRA]
__TT__________________TTCC__
2._GC-01-042-2-19
TTTTAAAAAGCC__GGAAGTTTCTCCTT
3._GC-01-042-2-19
ATTTAA____CC__GGAA__TTCTCCTT
4._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
5._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
6._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
7._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
8._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
9._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
10._GC-01-042-2-19
TTTTAAAAAGCCAAGGAAGTTTCTCCTT
11._RB_39_[BRA]
__TT____________________CC__
12._RB_39_[BRA]
__TT__________________TT____
13._RB_39_[BRA]
__TT__________________CTCC__
14._RB_39_[BRA]
__TT__________________CTCC__
15._RB_39_[BRA]
__TT__________________CTCC__
16._RB_39_[BRA]
__TT__________________CTCC__
17._RB_39_[BRA]
__TT__________________CTCC__
18._RB_39_[BRA]
__TT__________________CTCC__
19._RB_39_[BRA]
__TT__________________CTCC__
20._RB_39_[BRA]
__TT__________________CTCC__
21._RB_39_[BRA]
__TT__________________CTCC__
22._GC-01-42-2-19
__AA__AAAAGG__GGAAACAGAGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._RB_39_[BRA]
__CC__CCAAGG__AAGGGGGG______
2._GC-01-042-2-19
GGGGCCCC__GGGGACAAGGGGAACCCG
3._GC-01-042-2-19
GG__CCCCCCGGGGACAAGGGGAACCCG
4._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACC__
5._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
6._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
7._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
8._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
9._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
10._GC-01-042-2-19
GGGGCCCCCCGGGGACAAGGGGAACCCG
11._RB_39_[BRA]
______CCCCGG__CCAAGGGG______
12._RB_39_[BRA]
______CCCCGG__CCAA__GG______
13._RB_39_[BRA]
__GG__CC__GG__ACAAGGGG______
14._RB_39_[BRA]
______CCCCGG__ACAAGGGG______
15._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
16._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
17._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
18._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
19._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
20._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
21._RB_39_[BRA]
__GG__CCCCGG__ACAAGGGG______
22._GC-01-42-2-19
GGCCGGGGCCGGGG__AACCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCCAAGGCCCCGGAACCCCTTAACCCC
1._RB_39_[BRA]
AGCC__________AACC______CCCC
2._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
3._GC-01-042-2-19
__TT__GGCCCCGGACCCCCAAACCCCC
4._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
5._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
6._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
7._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
8._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
9._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
10._GC-01-042-2-19
AATTCCGGCCCCGGACCCCCAAACCCCC
11._RB_39_[BRA]
AATT__________CCCC______CCCC
12._RB_39_[BRA]
AATT__________CCCC______CCCC
13._RB_39_[BRA]
AATT__________ACCC______CCCC
14._RB_39_[BRA]
__TT__________ACCC______CCCC
15._RB_39_[BRA]
AATT__________ACCC______CCCC
16._RB_39_[BRA]
AATT__________ACCC______CCCC
17._RB_39_[BRA]
AATT__________ACCC______CCCC
18._RB_39_[BRA]
AATT__________ACCC______CCCC
19._RB_39_[BRA]
AATT__________ACCC______CCCC
20._RB_39_[BRA]
AATT__________ACCC______CCCC
21._RB_39_[BRA]
AATT__________ACCC______CCCC
22._GC-01-42-2-19
__AACCGGCCCC__AC__GGAAACGGGG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._RB_39_[BRA]
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
2._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
3._GC-01-042-2-19
TT__AGCC__GGCCAA__X_XX_XX_XX_XX_X
4._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
5._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
6._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
7._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
8._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
9._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
10._GC-01-042-2-19
TTTTAGCCCTGGCCAAGGX_XX_XX_XX_XX_X
11._RB_39_[BRA]
____AG__TTGGCT____X_XX_XX_XX_XX_X
12._RB_39_[BRA]
________TTGGCT____X_XX_XX_XX_XX_X
13._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
14._RB_39_[BRA]
TT__AG____GGCC____X_XX_XX_XX_XX_X
15._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
16._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
17._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
18._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
19._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
20._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
21._RB_39_[BRA]
TT__AG__CTGGCC____X_XX_XX_XX_XX_X
22._GC-01-42-2-19
__AA____AGCCGGTTGGX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA] GC-01-042-2-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._RB_39_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

69 %
87 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

68.4 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

66.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._RB_39_[BRA] GC-01-042-2-19

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._RB_39_[BRA]

60 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

12._RB_39_[BRA]

59.7 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

13._RB_39_[BRA]

58.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

14._RB_39_[BRA]

54.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

15._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

16._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

17._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

18._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

19._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

20._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

21._RB_39_[BRA]

53.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

35.7 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240