SNP Profiles of ICS-43   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._ICS_43
AACCCC________CCCCGG__CC____
11._ICS_43
AACCCC________CCCCGG__CC____
12._ICS_43
AACCCC________CCCCGG__CC____
13._ICS_43
AACCCC________CCCCGG__CC____
14._ICS_43
AACCCC________CCCCGG__CC____
15._ICS_43
AACCCC________CCCCGG__CC____
16._ICS_43
AACCCC________CCCCGG__CC____
17._ICS_43
AACCCC________CCCCGG__CC____
18._ICS_43
AACCCC________CCCCGG__CC____
19._ICS_43
AACCCC________CCCCGG__CC____
20._ICS43
____AA________CT______CC____
21._RUQ_144
AATTAA________CTCTAG__CC____
22._RUQ_144
__TTAA____CC__CT____CTCC____
23._ICS_43
AATTAA________CTCTAG__CC____
24._RUQ_144
____AA____CC________________
25._RUQ_144
AA__AAAGAG__GGAG__GGAGGGAGAT
26._ICS_43_Fld#_164_Plt#_1
AA__AAAGAG__GGAG__GGAGGGAGAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAAGGAAAACCGGAATT
1._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
2._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
3._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
4._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
5._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
6._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
7._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
8._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
9._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
10._ICS_43
__GG____GG______AAAA__GGAA__
11._ICS_43
__GG____GG______AAAA__GGAA__
12._ICS_43
__GG____GG______AAAA__GGAA__
13._ICS_43
__GG____GG______AAAA__GGAA__
14._ICS_43
__GG____GG______AAAA__GGAA__
15._ICS_43
__GG____GG______AAAA__GGAA__
16._ICS_43
__GG____GG______AAAA__GGAA__
17._ICS_43
__GG____GG______AAAA__GGAA__
18._ICS_43
__GG____GG______AAAA__GGAA__
19._ICS_43
__GG____GG______AAAA__GGAA__
20._ICS43
______CG__CT__GG__AACCCC____
21._RUQ_144
________GG______TTAA__GGAA__
22._RUQ_144
______CG______GG__AACCGG____
23._ICS_43
__AA____GG______TTAA__GGAA__
24._RUQ_144
__AATT________________GG____
25._RUQ_144
CCAACC__GGAGAGGGTTAAGGCCAAAA
26._ICS_43_Fld#_164_Plt#_1
CCAACC__GGAGAGGGTTAAGGCCAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
2._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
3._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
4._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
5._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
6._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
8._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._ICS_43
____CC__GGTT____GG__________
11._ICS_43
____CC__GGTT____GG__________
12._ICS_43
____CC__GGTT____GG__________
13._ICS_43
____CC__GGTT____GG__________
14._ICS_43
____CC__GGTT____GG__________
15._ICS_43
____CC__GGTT____GG__________
16._ICS_43
____CC__GGTT____GG__________
17._ICS_43
____CC__GGTT____GG__________
18._ICS_43
____CC__GGTT____GG__________
19._ICS_43
____CC__GGTT____GG__________
20._ICS43
__AGCC________GT__CT______AT
21._RUQ_144
____CC__AAGT____AG__________
22._RUQ_144
__AGCCACAAGT____AGCT____GTAT
23._ICS_43
____CC__AAGT____AG__________
24._RUQ_144
____CC__AA________CT________
25._RUQ_144
CCAGCCACAAACCCACAGAGAAGGAC__
26._ICS_43_Fld#_164_Plt#_1
CCAGCCACAAACCCACAGAGAAGGAC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._ICS_43
TT__________________TTCC____
11._ICS_43
TT__________________TTCC____
12._ICS_43
TT__________________TTCC____
13._ICS_43
TT__________________TTCC____
14._ICS_43
TT__________________TTCC____
15._ICS_43
TT__________________TTCC____
16._ICS_43
TT__________________TTCC____
17._ICS_43
TT__________________TTCC____
18._ICS_43
TT__________________TTCC____
19._ICS_43
TT__________________TTCC____
20._ICS43
__AG________________CT______
21._RUQ_144
CC__________________CTCT____
22._RUQ_144
____AG____________CTCT__GT__
23._ICS_43
CC__________________CTCT____
24._RUQ_144
____AG____________________GG
25._RUQ_144
GG__AGAGGG__GGGGACAGAGAGACGG
26._ICS_43_Fld#_164_Plt#_1
GG__AGAGGG__GGGGACAGAGAGACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAA
1._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
2._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
3._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
4._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
5._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
6._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
7._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
8._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
9._GC-01-051-3-06
CCCCCCAAGGGGAA__GGGGAACCCCAA
10._ICS_43
CC__CCAAGG__AAGGGGGG______AA
11._ICS_43
CC__CCAAGG__AAGGGGGG______AA
12._ICS_43
CC__CCAAGG__AAGGGGGG______AA
13._ICS_43
CC__CCAAGG__AAGGGGGG______AA
14._ICS_43
CC__CCAAGG__AAGGGGGG______AA
15._ICS_43
CC__CCAAGG__AAGGGGGG______AA
16._ICS_43
CC__CCAAGG__AAGGGGGG______AA
17._ICS_43
CC__CCAAGG__AAGGGGGG______AA
18._ICS_43
CC__CCAAGG__AAGGGGGG______AA
19._ICS_43
CC__CCAAGG__AA__GGGG______AA
20._ICS43
CGCT__AC__AGACGG________CC__
21._RUQ_144
CG__CTACGG__ACGGTTGT______AG
22._RUQ_144
CGCTCTAC__AGACGGTTGTAG______
23._ICS_43
____CTACGG__ACGGTTGT______AG
24._RUQ_144
____________ACGG__GTAG____AG
25._RUQ_144
CGAGAGACGGAGACGGAAACAG______
26._ICS_43_Fld#_164_Plt#_1
CGAGAGACGGAGACGGAAACAG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAAAGCCCCGGAACCCCTTAACCCCCC
1._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
2._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
3._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
4._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
5._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
6._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
7._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
8._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
9._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
10._ICS_43
CC__________AACC______CCCCCC
11._ICS_43
CC__________AACC______CCCCCC
12._ICS_43
CC__________AACC______CCCCCC
13._ICS_43
CC__________AACC______CCCCCC
14._ICS_43
CC__________AACC______CCCCCC
15._ICS_43
CC__________AACC______CCCCCC
16._ICS_43
CC__________AACC______CCCCCC
17._ICS_43
CC__________AACC______CCCCCC
18._ICS_43
CC__________AACC______CCCCCC
19._ICS_43
CC__________AACC______CCCCCC
20._ICS43
______________CC________CT__
21._RUQ_144
TT__________CCGG______TTCTCT
22._RUQ_144
____________CCGG____CCTT____
23._ICS_43
TT__________CCGG______TTCTCT
24._RUQ_144
____________CCGG____CC____CT
25._RUQ_144
AACCAGCCAA__CCCCGGATCCAAAG__
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCAA__CCCCGGATCCAAAG__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
CCGG__CCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
CC__CCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._ICS_43
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
19._ICS_43
______CCTTTT____X_XX_XX_XX_XX_XX_X
20._ICS43
________________X_XX_XX_XX_XX_XX_X
21._RUQ_144
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
22._RUQ_144
__AG__CTGT______X_XX_XX_XX_XX_XX_X
23._ICS_43
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
24._RUQ_144
____CT__GT______X_XX_XX_XX_XX_XX_X
25._RUQ_144
AA____AGAAAATTGGX_XX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
AA____AGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: ICS_43 GC-01-051-3-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

11._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016

12._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

13._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

14._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

15._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

16._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

17._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

18._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

20._ICS_43 ICS43

62 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

50 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43 RUQ_144

50 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_43

48.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

45.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

25._ICS_43 RUQ_144

31.4 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

31.4 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240