SNP Profiles of MA-12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
1._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
2._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
3._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
4._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
5._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
6._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
7._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
8._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
9._MA_15_[BRA]___	__	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
10._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
11._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
12._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
13._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
14._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
15._MA_15_[BRA]___	__	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
16._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
17._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
18._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
19._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG
1._MA_15_[BRA]___	AA	CC	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG
2._MA_15_[BRA]___	AA	CC	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG
3._MA_15_[BRA]___	AA	CC	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG
4._MA_15_[BRA]___	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__	CG
5._MA_15_[BRA]___	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__	CG
6._MA_15_[BRA]___	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__	CG
7._MA_15_[BRA]___	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__	CG
8._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
9._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
10._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
11._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
12._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
13._MA_15_[BRA]___	AT	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC	CG
14._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG
15._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG
16._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG
17._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG
18._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG
19._MA_15_[BRA]___	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG	CC
1._MA_15_[BRA]___	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG	CC
2._MA_15_[BRA]___	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG	CC
3._MA_15_[BRA]___	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG	CC
4._MA_15_[BRA]___	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__	__
5._MA_15_[BRA]___	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__	__
6._MA_15_[BRA]___	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__	__
7._MA_15_[BRA]___	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__	__
8._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	CG
9._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	CG
10._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	__
11._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	CG
12._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	CG
13._MA_15_[BRA]___	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA	CG
14._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__
15._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__
16._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__
17._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__
18._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__
19._MA_15_[BRA]___	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC	CC
1._MA_15_[BRA]___	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC	CC
2._MA_15_[BRA]___	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	__	CC
3._MA_15_[BRA]___	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC	CC
4._MA_15_[BRA]___	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
5._MA_15_[BRA]___	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
6._MA_15_[BRA]___	__	__	TT	__	__	__	__	__	__	__	__	__	CC	CC
7._MA_15_[BRA]___	__	__	TT	__	__	__	__	__	__	__	__	__	__	CC
8._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
9._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
10._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
11._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
12._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
13._MA_15_[BRA]___	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT	CT
14._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT
15._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT
16._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT
17._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT
18._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT
19._MA_15_[BRA]___	__	__	CT	__	__	__	__	__	__	__	__	__	CT	CT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG	CT
1._MA_15_[BRA]___	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG	CT
2._MA_15_[BRA]___	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG	CT
3._MA_15_[BRA]___	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG	CT
4._MA_15_[BRA]___	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__	__
5._MA_15_[BRA]___	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__	__
6._MA_15_[BRA]___	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__	__
7._MA_15_[BRA]___	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__	__
8._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
9._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
10._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
11._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
12._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
13._MA_15_[BRA]___	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG	CT
14._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__
15._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__
16._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__
17._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__
18._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__
19._MA_15_[BRA]___	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC	CC
1._MA_15_[BRA]___	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC	CC
2._MA_15_[BRA]___	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC	CC
3._MA_15_[BRA]___	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC	CC
4._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__	CC
5._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__	CC
6._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__	CC
7._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__	CC
8._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	__	GG	CC	AT	CC	TT
9._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC	TT
10._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC	TT
11._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC	TT
12._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC	TT
13._MA_15_[BRA]___	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC	TT
14._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	__	GG	__	__	__	TT
15._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT
16._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT
17._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT
18._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT
19._MA_15_[BRA]___	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X
1._MA_15_[BRA]___	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X
2._MA_15_[BRA]___	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X
3._MA_15_[BRA]___	CT	TT	TT	AA	CC	__	TT	TT	TT	GG	X_X	X_X	X_X	X_X
4._MA_15_[BRA]___	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X	X_X
5._MA_15_[BRA]___	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X	X_X
6._MA_15_[BRA]___	CT	TT	__	AA	__	__	TT	TT	__	__	X_X	X_X	X_X	X_X
7._MA_15_[BRA]___	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X	X_X
8._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
9._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
10._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
11._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
12._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
13._MA_15_[BRA]___	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
14._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
15._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
16._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
17._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
18._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
19._MA_15_[BRA]___	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X

Input profile: MA_15_[BRA] GC-01-060-3-15

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

1._MA_15_[BRA] GC-01-060-3-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._MA_15_[BRA] GC-01-060-3-15

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

3._MA_15_[BRA] GC-01-060-3-15

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 2

Dapeng Zhang, 2016

5._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 1 > FP

Dapeng Zhang, 2016

6._MA_15_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 5

Dapeng Zhang, 2016

7._MA_15_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 13

Dapeng Zhang, 2016

8._MA_15_[BRA] GC-01-060-3-15

60.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

9._MA_15_[BRA] GC-01-060-3-15

60.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

10._MA_15_[BRA] GC-01-060-3-15

60.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

11._MA_15_[BRA] GC-01-060-3-15

60.1 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP3

12._MA_15_[BRA] GC-01-060-3-15

60.1 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

13._MA_15_[BRA] GC-01-060-3-15

60.1 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._MA_15_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 7 > FP

Dapeng Zhang, 2016

15._MA_15_[BRA]

52.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 14

Dapeng Zhang, 2016

16._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 12 > F

Dapeng Zhang, 2016

17._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 15 > F

Dapeng Zhang, 2016

18._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 4

Dapeng Zhang, 2016

19._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 8

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240