SNP Profiles of MA-12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
1._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
2._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
3._MA_15_[BRA]___	__	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
4._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
5._MA_15_[BRA]___	AT	CC	CC	CC	AG	AG	CT	CT	CC	CT	GG	TT	CT	TT
6._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
7._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
8._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
9._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
10._MA_15_[BRA]___	__	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
11._MA_15_[BRA]___	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
12._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
13._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
14._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
15._MA_15_[BRA]___	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CC	CC
16._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
17._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
18._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__
19._MA_15_[BRA]___	AA	AA	CT	AA	__	__	__	__	CT	CC	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
1._MA_15_[BRA]___	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
2._MA_15_[BRA]___	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
3._MA_15_[BRA]___	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
4._MA_15_[BRA]___	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
5._MA_15_[BRA]___	AT	AA	AA	AG	CG	CG	CC	CT	AA	CT	GG	AT	AA	CC
6._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
7._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
8._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
9._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
10._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
11._MA_15_[BRA]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
12._MA_15_[BRA]___	AA	CC	__	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC
13._MA_15_[BRA]___	AA	CC	__	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC
14._MA_15_[BRA]___	AA	CC	__	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC
15._MA_15_[BRA]___	AA	CC	__	AG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC
16._MA_15_[BRA]___	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
17._MA_15_[BRA]___	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
18._MA_15_[BRA]___	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
19._MA_15_[BRA]___	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
1._MA_15_[BRA]___	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
2._MA_15_[BRA]___	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
3._MA_15_[BRA]___	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
4._MA_15_[BRA]___	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
5._MA_15_[BRA]___	CG	AT	TT	TT	GG	CC	CC	AA	GT	GT	TT	AG	TT	AA
6._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
7._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
8._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
9._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
10._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
11._MA_15_[BRA]___	CG	AT	__	__	__	CC	__	AA	GT	__	__	AG	__	__
12._MA_15_[BRA]___	CG	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG
13._MA_15_[BRA]___	CG	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG
14._MA_15_[BRA]___	CG	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG
15._MA_15_[BRA]___	CG	AA	TT	GG	AA	CG	CC	AA	TT	GG	TT	AA	CC	AG
16._MA_15_[BRA]___	CG	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__
17._MA_15_[BRA]___	CG	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__
18._MA_15_[BRA]___	CG	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__
19._MA_15_[BRA]___	CG	AA	__	__	__	CG	__	AA	TT	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
1._MA_15_[BRA]___	CG	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
2._MA_15_[BRA]___	CG	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
3._MA_15_[BRA]___	CG	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
4._MA_15_[BRA]___	__	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
5._MA_15_[BRA]___	CG	GG	TT	CT	AG	AG	AA	CC	AC	AG	AG	GG	TT	CT
6._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
7._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
8._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
9._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
10._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
11._MA_15_[BRA]___	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
12._MA_15_[BRA]___	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC
13._MA_15_[BRA]___	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	__
14._MA_15_[BRA]___	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC
15._MA_15_[BRA]___	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GT	TT	CC
16._MA_15_[BRA]___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CC
17._MA_15_[BRA]___	__	__	__	TT	__	__	__	__	__	__	__	__	__	__
18._MA_15_[BRA]___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CC
19._MA_15_[BRA]___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
1._MA_15_[BRA]___	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
2._MA_15_[BRA]___	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
3._MA_15_[BRA]___	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
4._MA_15_[BRA]___	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
5._MA_15_[BRA]___	CT	TT	AG	CC	CC	TT	CC	CG	GG	AC	AG	GG	GG	AG
6._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
7._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
8._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
9._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
10._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
11._MA_15_[BRA]___	CT	__	__	CC	__	TT	CC	CG	__	AC	AG	GG	GG	__
12._MA_15_[BRA]___	CC	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG
13._MA_15_[BRA]___	CC	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG
14._MA_15_[BRA]___	CC	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG
15._MA_15_[BRA]___	CC	TT	AG	CC	TT	CC	AA	GG	GG	CC	AG	TT	GG	GG
16._MA_15_[BRA]___	CC	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__
17._MA_15_[BRA]___	CC	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__
18._MA_15_[BRA]___	CC	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__
19._MA_15_[BRA]___	CC	__	__	CC	__	CC	AA	GG	__	CC	AG	TT	GG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC
1._MA_15_[BRA]___	CT	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC
2._MA_15_[BRA]___	CT	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC
3._MA_15_[BRA]___	CT	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC
4._MA_15_[BRA]___	CT	CC	AA	CC	AC	AG	CC	AC	AG	AA	GG	CC	AT	CC
5._MA_15_[BRA]___	CT	CC	AA	CC	AC	AG	CC	AC	AG	__	GG	CC	AT	CC
6._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__
7._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__
8._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__
9._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__
10._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	AA	GG	__	__	__
11._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	__	GG	__	__	__
12._MA_15_[BRA]___	CT	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC
13._MA_15_[BRA]___	CT	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC
14._MA_15_[BRA]___	CT	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC
15._MA_15_[BRA]___	CT	CC	AA	CC	CC	AA	CC	AA	AA	CC	GG	CC	AA	AC
16._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__
17._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__
18._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__
19._MA_15_[BRA]___	__	__	AA	CC	__	__	__	__	__	CC	GG	__	__	__

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
1._MA_15_[BRA]___	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
2._MA_15_[BRA]___	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
3._MA_15_[BRA]___	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
4._MA_15_[BRA]___	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
5._MA_15_[BRA]___	TT	CT	CT	CT	AG	CC	CC	GT	CC	AT	GG	X_X	X_X	X_X
6._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
7._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
8._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
9._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
10._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
11._MA_15_[BRA]___	TT	CT	CT	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X
12._MA_15_[BRA]___	CC	CT	TT	TT	AA	CC	__	TT	TT	TT	GG	X_X	X_X	X_X
13._MA_15_[BRA]___	CC	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
14._MA_15_[BRA]___	CC	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
15._MA_15_[BRA]___	CC	CT	TT	TT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
16._MA_15_[BRA]___	CC	CT	TT	__	AA	__	__	TT	TT	__	__	X_X	X_X	X_X
17._MA_15_[BRA]___	CC	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
18._MA_15_[BRA]___	CC	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
19._MA_15_[BRA]___	CC	CT	TT	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X

Input profile: MA_15_[BRA] GC-01-060-3-15

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

1._MA_15_[BRA] GC-01-060-3-15

identical
95 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP3

2._MA_15_[BRA] GC-01-060-3-15

identical
95 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._MA_15_[BRA] GC-01-060-3-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

4._MA_15_[BRA] GC-01-060-3-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

5._MA_15_[BRA] GC-01-060-3-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

6._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 12 > F

Dapeng Zhang, 2016

7._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 15 > F

Dapeng Zhang, 2016

8._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 4

Dapeng Zhang, 2016

9._MA_15_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 8

Dapeng Zhang, 2016

10._MA_15_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 14

Dapeng Zhang, 2016

11._MA_15_[BRA]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 7 > FP

Dapeng Zhang, 2016

12._MA_15_[BRA] GC-01-060-3-15

60.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._MA_15_[BRA] GC-01-060-3-15

60.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

14._MA_15_[BRA] GC-01-060-3-15

60.1 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._MA_15_[BRA] GC-01-060-3-15

60.1 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

16._MA_15_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 5

Dapeng Zhang, 2016

17._MA_15_[BRA]

52.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 13

Dapeng Zhang, 2016

18._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 2

Dapeng Zhang, 2016

19._MA_15_[BRA]

52.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1315 1 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240