SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
3._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
4._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
5._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
6._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
7._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
8._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
9._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
10._EET_400_[ECU]___
AACCCC________CCCCGG__CC____
11._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
15._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
16._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
17._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
18._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
19._EET_400_[ECU]___
__CTAC________CCCTGG__CT____
20._EET_400_[ECU]___
__CTAC____TT__CC____CTTT____
21._EET_400_[ECU]___
AA__ACAGAG__AGGG__AGAGAGAGAT
22._EET_400_[ECU]___
AA__ACAAAG__GGGG__AGAGAGAAAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
3._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
4._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
5._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
6._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
7._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
8._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
9._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
10._EET_400_[ECU]___
__GG____CG________ATAA__GGAA
11._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
12._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
13._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
14._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
15._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
16._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
17._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
18._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
19._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
20._EET_400_[ECU]___
______CC____________AACCCG__
21._EET_400_[ECU]___
ACGGGG__GGGGAAAAGGAAAACCGGAT
22._EET_400_[ECU]___
AAGGGG__CCGGAAAGGGATAACGCCAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
3._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
4._EET_400_[ECU]___
______GG__GGGG____AA________
5._EET_400_[ECU]___
______GG__GGGG____AA________
6._EET_400_[ECU]___
______GG__GGGG____AA________
7._EET_400_[ECU]___
______GG__GGGG____AA________
8._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
9._EET_400_[ECU]___
______GG__GGGG____AA________
10._EET_400_[ECU]___
______GG__AGGG____AG________
11._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._EET_400_[ECU]___
______GG__AGGT____AG________
15._EET_400_[ECU]___
______GG__AAGT____AG________
16._EET_400_[ECU]___
______GG__AAGT____AG________
17._EET_400_[ECU]___
______GG__AAGT____AG________
18._EET_400_[ECU]___
______GG__AAGT____AG________
19._EET_400_[ECU]___
______GG__AAGT____AG________
20._EET_400_[ECU]___
____GGCGCCAAGT____AGCC____GG
21._EET_400_[ECU]___
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._EET_400_[ECU]___
AAACAGCGACAAAACCAAAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGAAGGTTCCCCTT
1._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCCCTT
2._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCCCTT
3._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTT__CCTT
4._EET_400_[ECU]___
__TT__________________CCCC__
5._EET_400_[ECU]___
__TT__________________CCCC__
6._EET_400_[ECU]___
__TT__________________CCCC__
7._EET_400_[ECU]___
__TT____________________CC__
8._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCTCCTT
9._EET_400_[ECU]___
__TT__________________CTCC__
10._EET_400_[ECU]___
__TT__________________CTCC__
11._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CTCCTT
12._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CTCCTT
13._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CTCCTT
14._EET_400_[ECU]___
__TT__________________CTCC__
15._EET_400_[ECU]___
__TT__________________CTCC__
16._EET_400_[ECU]___
__TT__________________CTCC__
17._EET_400_[ECU]___
__TT__________________CTCC__
18._EET_400_[ECU]___
__TT__________________CTCC__
19._EET_400_[ECU]___
__TT__________________CT____
20._EET_400_[ECU]___
TT____AG____________CCCT__TT
21._EET_400_[ECU]___
__AA__GGAGAG__GGAGCCGGAAGGAA
22._EET_400_[ECU]___
__AG__AAAAGG__AGAGCCGGAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
1._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
2._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
3._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
4._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
5._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
6._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
7._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
8._EET_400_[ECU]___
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
9._EET_400_[ECU]___
__CC__TTAAGG__AAGGTTGG______
10._EET_400_[ECU]___
__CC__CCACGG__ACAATTGG______
11._EET_400_[ECU]___
GGCCCCTTCCGGGGACAGGGGGAGTTCC
12._EET_400_[ECU]___
GGCCCCTTCCGGGGACAGGGGGAGTTCC
13._EET_400_[ECU]___
GGCCCCTTCCGGGGACAGGGGGAGTTCC
14._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
15._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
16._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
17._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
18._EET_400_[ECU]___
__CC__TTCCGG__ACAGGGGG______
19._EET_400_[ECU]___
______TTCCGG__ACAGGGGG______
20._EET_400_[ECU]___
__CCCCTTCC__GGACAGGGGGAG____
21._EET_400_[ECU]___
GGGGGGAGCCCGGGACAGCCACAA____
22._EET_400_[ECU]___
GGGGGGAGCCCGGGCCAGCCCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AATTAAAACCCCAACCGGCCAACCCCTT
1._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
2._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
3._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
4._EET_400_[ECU]___
AATT__________CCGG______CCTT
5._EET_400_[ECU]___
AATT__________CCGG______CCTT
6._EET_400_[ECU]___
AATT__________CCGG______CCTT
7._EET_400_[ECU]___
AATT__________CCGG______CCTT
8._EET_400_[ECU]___
AATTAAAACCCCAACCGGCCAACCCCTT
9._EET_400_[ECU]___
AATT__________CCGG______CCTT
10._EET_400_[ECU]___
AATT__________ACGG______TTCT
11._EET_400_[ECU]___
AACTACAGACCCAGACCCCCATACCTTT
12._EET_400_[ECU]___
AACTACAGACCCAGACCCCCATACCTTT
13._EET_400_[ECU]___
AACTACAGACCCAGACCCCCATACCTTT
14._EET_400_[ECU]___
AACT__________ACCC______CTTT
15._EET_400_[ECU]___
AACT__________ACCC______CTTT
16._EET_400_[ECU]___
AACT__________ACCC______CTTT
17._EET_400_[ECU]___
AACT__________ACCC______CTTT
18._EET_400_[ECU]___
AACT__________ACCC______CTTT
19._EET_400_[ECU]___
AACT__________ACCC______CTTT
20._EET_400_[ECU]___
______________ACCC____ACCT__
21._EET_400_[ECU]___
__AGACAGACAC__ACCGGGATCCAGAG
22._EET_400_[ECU]___
__GGCCGGACAC__ACCGGGATCCAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
1._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
2._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
3._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
4._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._EET_400_[ECU]___
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
9._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._EET_400_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._EET_400_[ECU]___
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
12._EET_400_[ECU]___
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
13._EET_400_[ECU]___
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
14._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
15._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
16._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
17._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
18._EET_400_[ECU]___
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
19._EET_400_[ECU]___
____AG__CCGT______X_XX_XX_XX_XX_X
20._EET_400_[ECU]___
____AGCCCTGT______X_XX_XX_XX_XX_X
21._EET_400_[ECU]___
__AG____AGACAGATGGX_XX_XX_XX_XX_X
22._EET_400_[ECU]___
__AG____AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

6._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

8._EET_400_[ECU] GC-01-066-4-02

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

10._EET_400_[ECU]

74.4 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

67.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

17._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

64.7 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

64.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.4 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

31.6 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240