SNP Profiles of GU-239H View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
1._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
2._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
3._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
4._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
5._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
6._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CT	CT	CT	AG	CC	CT	CT	AT
7._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
8._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
9._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
10._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
11._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
12._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
13._RUQ_227	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
14._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
15._GU_239_/H	AT	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_	_
16._GC-01-079-4-15	AT	CT	CC	AA	AA	TT	CC	CT	CT	AG	CC	CT	CT	AT
17._RUQ_227	_	CT	CC	_	_	CT	_	CT	_	_	CC	CT	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
1._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
2._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
3._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
4._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
5._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	_	AT	CG	CC
6._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
7._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
8._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
9._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
10._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
11._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
12._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
13._RUQ_227	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
14._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	AT	AT	_	CC
15._GU_239_/H	_	_	AG	_	_	CG	_	_	_	_	_	AT	_	CC
16._GC-01-079-4-15	AC	AA	AG	CG	CG	CG	CC	AA	CT	GG	AT	AT	CG	CC
17._RUQ_227	_	_	_	_	CG	_	_	_	_	GG	_	AT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
1._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
2._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
3._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
4._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
5._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
6._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
7._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
8._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
9._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
10._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
11._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
12._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
13._RUQ_227	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
14._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
15._GU_239_/H	AA	_	_	_	CG	_	AA	TT	_	_	AG	_	_	_
16._GC-01-079-4-15	AA	TT	GT	AG	CG	AC	AA	TT	GT	TT	AG	CT	AG	CC
17._RUQ_227	_	_	_	AG	CG	AC	AA	TT	_	_	AG	CT	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
1._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
2._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
3._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
4._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
5._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
6._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
7._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
8._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
9._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
10._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
11._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
12._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
13._RUQ_227	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
14._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
15._GU_239_/H	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
16._GC-01-079-4-15	GT	AT	CT	GG	AG	AA	CT	CC	GG	AG	TT	TT	CT	CT
17._RUQ_227	GT	AT	_	_	AG	_	_	_	_	_	_	CT	CT	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
1._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
2._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
3._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
4._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
5._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
6._GC-01-079-4-15	TT	AG	CC	CT	CT	_	GG	AG	AA	GG	GT	GG	AG	CT
7._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
8._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
9._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
10._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
11._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
12._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
13._RUQ_227	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
14._GU_239_/H	_	_	CC	_	CT	_	GG	_	AA	GG	GT	GG	_	_
15._GU_239_/H	_	_	CC	_	CT	AC	GG	_	AA	GG	GT	GG	_	_
16._GC-01-079-4-15	TT	AG	CC	CT	CT	AC	GG	AG	AA	GG	GT	GG	AG	CT
17._RUQ_227	TT	-	CC	CT	CT	AC	_	AG	AA	GG	GT	GG	AG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
1._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
2._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
3._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
4._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
5._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
6._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
7._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
8._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
9._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
10._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
11._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
12._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
13._RUQ_227	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
14._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
15._GU_239_/H	_	GG	TT	_	_	_	_	_	AC	GG	_	_	_	TT
16._GC-01-079-4-15	CC	GG	TT	CC	AG	AC	AC	AG	AC	GG	CT	AA	AC	TT
17._RUQ_227	_	_	_	_	_	_	_	_	AC	GG	_	_	AC	TT

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
1._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
2._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
3._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
4._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
5._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
6._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
7._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
8._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
9._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
10._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
11._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
12._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
13._RUQ_227	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
14._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
15._GU_239_/H	CT	CT	_	AA	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X
16._GC-01-079-4-15	CT	CT	TT	AA	CT	CC	GG	TT	AT	GG	X_X	X_X	X_X	X_X
17._RUQ_227	_	_	_	AA	-	CC	GG	_	_	_	X_X	X_X	X_X	X_X

Input profile: GU_239_/H GC-01-079-4-15

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

1._GU_239_/H GC-01-079-4-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

2._GU_239_/H GC-01-079-4-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP3

3._GU_239_/H GC-01-079-4-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._GU_239_/H GC-01-079-4-15

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

5._GU_239_/H GC-01-079-4-15

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._GU_239_/H GC-01-079-4-15

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._GU_239_/H

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 2 > FP

Dapeng Zhang, 2016

8._GU_239_/H

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 5

Dapeng Zhang, 2016

9._GU_239_/H

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 7

Dapeng Zhang, 2016

10._GU_239_/H

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 10

Dapeng Zhang, 2016

11._GU_239_/H

identical
39 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 11

Dapeng Zhang, 2016

12._GU_239_/H

identical
39 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 9 > FP

Dapeng Zhang, 2016

13._GU_239_/H RUQ_227

identical
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._GU_239_/H

identical
38 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: 1415 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._GU_239_/H

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1415 6

Dapeng Zhang, 2016

16._GU_239_/H GC-01-079-4-15

99.5 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._GU_239_/H RUQ_227

96.3 %
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240