SNP Profiles of LCTEEN 90   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCAAAATTTTCCCCAATTTTTTTT
1._UF_712___
TTCCCCAAAATTTTCCCCAATTTTTTTT
2._UF_712___
TTCCCCAAAATTTTCCCCAATTTTTTTT
3._UF_712___
TTCCCCAAAATTTTCCCCAATTTTTTTT
4._UF_712___
__CCCC____TT__CC____TTTT____
5._UF_712___
__CCCC____TT__CC____TTTT____
6._UF_712___
TTCCCC________CCCCAA__TT____
7._UF_712___
TTCCCC________CCCCAA__TT____
8._UF_712___
TTCCCC________CCCCAA__TT____
9._UF_712___
TTCCCC________CCCCAA__TT____
10._UF_712___
ATCCCC________CCCCAA__TT____
11._UF_712___
ATCCCC________CCCCAA__TT____
12._UF_712___
ATCCCC________CCCCAA__TT____
13._UF_712___
__________TT________________
14._UF_712___
ATCCTT________CCCCAA__TT____
15._UF_712___
AT__CCAAAA__AAGG__AAAAAAAAAA
16._UF_712___
AT__CCAAAA__AAGG__AAAAAAAAAA
17._UF_712___
AT__CCAAAA__AAGG__AAAAAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGGGCCAACCGGAATTCCGG
1._UF_712___
AAAAGGCCGGGGCCAACCGGAATTCCGG
2._UF_712___
AAAAGGCCGGGGCCAACCGGAATTCCGG
3._UF_712___
AAAAGGCCGGGGCCAACCGGAATTCCGG
4._UF_712___
________GG________GG__TTCCGG
5._UF_712___
________GG________GG__TTCCGG
6._UF_712___
____GG____GG________AATT__GG
7._UF_712___
____GG____GG________AATT__GG
8._UF_712___
____GG____GG________AATT__GG
9._UF_712___
____GG____GG________AATT__GG
10._UF_712___
____GG____GG________AATT__GG
11._UF_712___
____GG____GG________AATT__GG
12._UF_712___
____GG______________AATT__GG
13._UF_712___
____GGCC__________________GG
14._UF_712___
____GG______________AATT__GG
15._UF_712___
AAAAGGGG__GGGGAAGGGGAATTGGCC
16._UF_712___
AAAAGGGG__GGGGAAGGGGAATTGGCC
17._UF_712___
AAAAGGGG__GGGGAAGGGGAATTGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
1._UF_712___
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
2._UF_712___
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
3._UF_712___
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
4._UF_712___
______GGGGCCAAGG____GGCC____
5._UF_712___
______GGGGCCAAGG____GGCC____
6._UF_712___
TT______GG__AAGG____GG______
7._UF_712___
TT______GG__AAGG____GG______
8._UF_712___
TT______GG__AAGG____GG______
9._UF_712___
TT______GG__AAGG____GG______
10._UF_712___
TT______GG__AAGG____GG______
11._UF_712___
TT______GG__AAGG____GG______
12._UF_712___
TT______GG__AAGG____GG______
13._UF_712___
________GG__AA________CC____
14._UF_712___
TT______GG__AAGG____GG______
15._UF_712___
TTAAAAGGGGCCAACCCCAAGGGGGGCC
16._UF_712___
TTAAAAGGGGCCAACCCCAAGGGGGGCC
17._UF_712___
TTAAAAGGGGCCAACCCCAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCAAGGAATTTTCCTT
1._UF_712___
GGTTTTGGAAAACCAAGGAATTTTCCTT
2._UF_712___
GGTTTTGGAAAACCAAGGAATTTTCCTT
3._UF_712___
GGTTTTGGAAAACCAAGGAATTTTCCTT
4._UF_712___
GGTT____AA____________TT__TT
5._UF_712___
GGTT____AA____________TT__TT
6._UF_712___
____TT________________TTCC__
7._UF_712___
____TT________________TTCC__
8._UF_712___
____TT________________TTCC__
9._UF_712___
____TT________________TTCC__
10._UF_712___
____TT________________TTCC__
11._UF_712___
____TT________________TTCC__
12._UF_712___
____TT________________TTCC__
13._UF_712___
________AA__________________
14._UF_712___
____TT________________TTCC__
15._UF_712___
CC__AA__AAAAGG__GGAAAAAAGGAA
16._UF_712___
CC__AA__AAAAGG__GGAAAAAAGGAA
17._UF_712___
CC__AA__AAAAGG__GGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTCCCCGGCCAAGGGGAATTCC
1._UF_712___
GGCCCCTTCCCCGGCCAAGGGGAATTCC
2._UF_712___
GGCCCCTTCCCCGGCCAAGGGGAATTCC
3._UF_712___
GGCCCCTTCCCCGGCCAAGGGGAATTCC
4._UF_712___
__CCCCTTCC__GGCCAAGGGGAA____
5._UF_712___
__CCCCTTCC__GGCCAAGGGGAA____
6._UF_712___
__CC__TTCCCC__CCAAGGGG______
7._UF_712___
__CC__TTCCCC__CCAAGGGG______
8._UF_712___
__CC__TTCCCC__CCAAGGGG______
9._UF_712___
__CC__TTCCCC__CCAAGGGG______
10._UF_712___
__CC__TTCCCC__CCAAGGGG______
11._UF_712___
__CC__TTCCCC__CCAAGGGG______
12._UF_712___
__CC__TTCCCC__CCAAGGGG______
13._UF_712___
GG____________CCAA__GGAA____
14._UF_712___
__CC__TTCCCC__CC__GGGG______
15._UF_712___
GGGGGGAACCCCGGCCAACCCCAA____
16._UF_712___
GGGGGGAACCCCGGCCAACCCCAA____
17._UF_712___
GGGGGGAACCCCGGCCAACCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGAAAAAAAACCCCAACCCTTT
1._UF_712___
AACCCCGGAAAAAAAACCCCAACCCTTT
2._UF_712___
AACCCCGGAAAAAAAACCCCAACCCTTT
3._UF_712___
AACCCCGGAAAAAAAA__CCAACCCTTT
4._UF_712___
______________AACC____CCCT__
5._UF_712___
______________AACC____CCCT__
6._UF_712___
AACC__________AACC______CTTT
7._UF_712___
AACC__________AACC______CTTT
8._UF_712___
AACC__________AACC______CTTT
9._UF_712___
AACC__________AA________CTTT
10._UF_712___
GGCC__________AACC______CTTT
11._UF_712___
GGCC__________AACC______CTTT
12._UF_712___
GGCC__________AACC______CTTT
13._UF_712___
GG____________AACC____CC____
14._UF_712___
GGCC__________AACC______CTTT
15._UF_712___
__GGCCGGAAAA__AAGGGGAACCAGAA
16._UF_712___
__GGCCGGAAAA__AAGGGGAACCAGAA
17._UF_712___
__GGCCGGAAAA__AAGGGGAACCAGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
1._UF_712___
CCTTGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
2._UF_712___
CCTTGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
3._UF_712___
CCTTGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
4._UF_712___
____GGCCCCGG______X_XX_XX_XX_XX_X
5._UF_712___
____GGCCCCGG______X_XX_XX_XX_XX_X
6._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
7._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
8._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
9._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
10._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
11._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
12._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
13._UF_712___
CC____CC__GG______X_XX_XX_XX_XX_X
14._UF_712___
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
15._UF_712___
__AA____GGCCGGTTGGX_XX_XX_XX_XX_X
16._UF_712___
__AA____GGCCGGTTGGX_XX_XX_XX_XX_X
17._UF_712___
__AA____GGCCGGTTGGX_XX_XX_XX_XX_X

Input profile: UF_712 GC-01-089-5-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._UF_712 GC-01-089-5-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._UF_712 GC-01-089-5-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._UF_712 GC-01-089-5-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._UF_712 RUQ_1683

identical
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._UF_712 RUQ_1638

identical
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._UF_712

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016

7._UF_712

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

8._UF_712

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

9._UF_712

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

10._UF_712 RUQ_1638

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._UF_712 RUQ_1638

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._UF_712

96.1 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

13._UF_712 RUQ_1683

95 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._UF_712

93.2 %
37 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

15._UF_712 RUQ_1683

48.7 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._UF_712 MITC-000350

48.7 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._UF_712 MITC-000039

48.7 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240