SNP Profiles of SC 1 [UNK]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._ICS_40___
AAAACTAC________CTCTGG__CC__
7._ICS_40___
AAAACTAC________CTCTGG__CC__
8._ICS_40___
AAAACTAC________CTCTGG__CC__
9._ICS_40___
AAAACTAC________CTCTGG__CC__
10._ICS_40___
AAAACTAC________CTCTGG__CC__
11._ICS_40___
AAAACTAC________CTCTGG__CC__
12._ICS_40___
AAAACTAC________CTCTGG__CC__
13._ICS_40___
AAAACTAC________CTCTGG__CC__
14._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
15._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
16._ICS_40___
____CTAA____CT__CT____CTCC__
17._ICS_40___
AAAACTAC________CTCTGG__CC__
18._ICS_40___
AAAACTAC________CTCTGG__CC__
19._ICS_40___
AAAACT__________CTCTGG__CC__
20._ICS_40___
______AC____CT______________
21._ICS_40___
AAACCCCCAGAGTTTTCCTTAACTTTCT
22._ICS_40___
AAACCTCC________CCCCAG__CC__
23._ICS_40___
AAACCCCC________CCTTAA__TT__
24._ICS_40___
AAAA__ACAGAG__GGAG__GGAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_40___
______AA____GG________ATAT__
7._ICS_40___
______AA____GG________ATAT__
8._ICS_40___
______AA____GG________ATAT__
9._ICS_40___
______AA____GG________ATAT__
10._ICS_40___
______AA____GG________ATAT__
11._ICS_40___
______AA____GG________ATAT__
12._ICS_40___
______AA____GG________ATAT__
13._ICS_40___
______AA____GG________ATAT__
14._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
15._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
16._ICS_40___
__________CG________AG__ATCG
17._ICS_40___
______AA____GG________ATAT__
18._ICS_40___
______AA____GG________ATAT__
19._ICS_40___
______AA____GG________AT____
20._ICS_40___
______AATT__________________
21._ICS_40___
ATAAAAGGCCCGGGCCAACTAGATATCG
22._ICS_40___
______GG____CG________TTAA__
23._ICS_40___
______GG____GG________ATAT__
24._ICS_40___
ATCCAGAACC__GGAGAGAAAGATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGGTAGCCAA
1._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
2._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
3._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
4._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
5._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
6._ICS_40___
CGAA______CC__AAGT____AG____
7._ICS_40___
CGAA______CC__AAGT____AG____
8._ICS_40___
CGAA______CC__AAGT____AG____
9._ICS_40___
CGAA______CC__AAGT____AG____
10._ICS_40___
CGAA______CC__AAGT____AG____
11._ICS_40___
CGAA______CC__AAGT____AG____
12._ICS_40___
CGAA______CC__AAGT____AG____
13._ICS_40___
CGAA______CC__AAGT____AG____
14._ICS_40___
CGAACTGTAGCCACAAGTGGGTAGCCAA
15._ICS_40___
CGAACTGTAGCCACAAGTGG__AGCCAA
16._ICS_40___
CG______AGCCACAAGT____AGCC__
17._ICS_40___
CGAA______CC__AAGT____AG____
18._ICS_40___
CGAA______CC__AAGT____AG____
19._ICS_40___
CGAA______CC__AAGT__________
20._ICS_40___
CG________CC__AA________CC__
21._ICS_40___
CCATTTGTGGGGCCAAGGGGTTGGCCGG
22._ICS_40___
CGAA______CC__AAGT____GG____
23._ICS_40___
CCAT______GG__AAGG____GG____
24._ICS_40___
CGAAAGACAGCCACAAACCCACAGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
4._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
5._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
6._ICS_40___
______CC__________________CT
7._ICS_40___
______CC__________________CT
8._ICS_40___
______CC__________________CT
9._ICS_40___
______CC__________________CT
10._ICS_40___
______CC__________________CT
11._ICS_40___
______CC__________________CT
12._ICS_40___
______CC__________________CT
13._ICS_40___
______CC__________________CT
14._ICS_40___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
15._ICS_40___
CCGT__CCAGAGAGCTCCGGGGGTTTCT
16._ICS_40___
__GTAT____AG____________CTCT
17._ICS_40___
______CC__________________CT
18._ICS_40___
______CC__________________CT
19._ICS_40___
____________________________
20._ICS_40___
__________AG________________
21._ICS_40___
CCGGTTCTAGGGAGCCACGGAGGTTTTT
22._ICS_40___
______CT__________________CC
23._ICS_40___
______CT__________________TT
24._ICS_40___
GGAC__GG__AGAGAG__GGGGACAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGCTCTACGGAGACAGGTGTAG
1._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
2._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
3._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
4._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
5._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
6._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
7._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
8._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
9._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
10._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
11._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
12._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
13._ICS_40___
CT____CG__CT__GG__ACAGGTGT__
14._ICS_40___
CTGTGGCGCTCT__GGAGACAGGTGTAG
15._ICS_40___
CTGTGGCGCTCTACGGAGACAGGTGTAG
16._ICS_40___
__GT__CGCTCTAC__AGACAGGTGTAG
17._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
18._ICS_40___
CT____CG__CTACGG__ACAGGTGT__
19._ICS_40___
__________CTACGG__ACAGGTGT__
20._ICS_40___
____GG____________ACAG__GTAG
21._ICS_40___
CCTTGGCCCCTTCCGGGGACAGGGGTAG
22._ICS_40___
CC____GG__TTACCG__CCAATTGG__
23._ICS_40___
CC____CC__TTCCGG__ACAGGGGT__
24._ICS_40___
AGACGGCGAGAGACGGAGACAGACACAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTCCAGACAAAGCCCGCTATCC
1._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
2._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
3._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
4._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
5._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
6._ICS_40___
____GGTT__________CCCG______
7._ICS_40___
____GGTT__________CCCG______
8._ICS_40___
____GGTT__________CCCG______
9._ICS_40___
____GGTT__________CCCG______
10._ICS_40___
____GGTT__________CCCG______
11._ICS_40___
____GGTT__________CCCG______
12._ICS_40___
____GGTT__________CCCG______
13._ICS_40___
____GGTT__________CCCG______
14._ICS_40___
CTCCGGTTCCAGACAAAGCCCGCTATCC
15._ICS_40___
__CCGGTTCCAGACAAAGCCCGCTATCC
16._ICS_40___
__________________CCCG____CC
17._ICS_40___
____AGTT__________CCCG______
18._ICS_40___
____AGTT__________CCGG______
19._ICS_40___
____AGTT__________CCGG______
20._ICS_40___
____AG____________CCCG____CC
21._ICS_40___
CTCCAACTACAGACCCAAAACCCCAAAC
22._ICS_40___
____AACT__________ACGG______
23._ICS_40___
____AACT__________AACC______
24._ICS_40___
______AACCAGACAA__CCCCAGATCC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
1._ICS_40___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
2._ICS_40___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
3._ICS_40___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
4._ICS_40___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
5._ICS_40___
CTCTCTTTAGCTCT__TTATGGX_XX_XX_X
6._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
7._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
8._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
9._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
10._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
11._ICS_40___
CTCTCT__AG__CT__TT____X_XX_XX_X
12._ICS_40___
CT__CT__AG__CTGTTT____X_XX_XX_X
13._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
14._ICS_40___
CTCTCTTTAGCTCTGTTTCCCCX_XX_XX_X
15._ICS_40___
CT__CTTTAGCTCTGTTTCCCCX_XX_XX_X
16._ICS_40___
CT______AG__CTGT______X_XX_XX_X
17._ICS_40___
CTCTCT__AG__CTGTCT____X_XX_XX_X
18._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
19._ICS_40___
CTCTCT__AG__CTGTTT____X_XX_XX_X
20._ICS_40___
____CT____CT__GT______X_XX_XX_X
21._ICS_40___
TTCTCCCCAGCCCCGGCTATGGX_XX_XX_X
22._ICS_40___
CTCTCC__AA__TTGTCT____X_XX_XX_X
23._ICS_40___
TTCTCC__AG__CCGGCT____X_XX_XX_X
24._ICS_40___
AGAG__AA____AGAAAAATGGX_XX_XX_X

Input profile: ICS_40 GC-01-106-6-03

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._ICS_40 GC-01-106-6-03

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_40 GC-01-106-6-03

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

3._ICS_40 GC-01-106-6-03

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

4._ICS_40 GC-01-106-6-03

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._ICS_40 GC-01-106-6-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

7._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016

8._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

9._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

10._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

11._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

12._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

13._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

14._ICS_40 GC-01-106-6-03

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

15._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

16._ICS_40 RUQ_1432

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_40 RUQ_1432

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_40

97.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

19._ICS_40

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._ICS_40 GC-01-106-6-03

63.2 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._ICS_40

62.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

23._ICS_40

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

55.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240