SNP Profiles of NA 45 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
1._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
2._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
3._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
4._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
5._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
6._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
7._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
8._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
9._GC-01-111-6-08	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
10._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
11._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
12._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
13._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
14._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
15._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_
16._NA_45	AA	TT	AA	_	_	_	_	CC	CC	GG	_	CC	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
1._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
2._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
3._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
4._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
5._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
6._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
7._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
8._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
9._GC-01-111-6-08	AA	GG	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CG	AA
10._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
11._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
12._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
13._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
14._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
15._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA
16._NA_45	_	GG	_	_	GG	_	_	_	_	TT	AA	_	CG	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
1._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
2._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
3._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
4._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
5._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
6._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
7._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
8._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
9._GC-01-111-6-08	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
10._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
11._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
12._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
13._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
14._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
15._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
16._NA_45	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CT	CC	TT
1._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	_	CC	TT
2._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CT	CC	_
3._NA_45	_	CT	_	_	_	_	_	_	_	_	_	_	CC	_
4._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
5._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
6._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
7._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
8._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
9._GC-01-111-6-08	TT	CT	AA	GG	AA	CC	CC	GG	GG	GG	TT	CC	CC	TT
10._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
11._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
12._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
13._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
14._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
15._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_
16._NA_45	_	CT	_	_	_	_	_	_	_	_	_	CC	CC	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
1._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
2._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
3._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
4._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
5._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
6._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
7._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
8._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
9._GC-01-111-6-08	GG	CG	CC	TT	AA	GG	GG	AC	AG	GT	GG	GG	TT	CC
10._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
11._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
12._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
13._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
14._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
15._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_
16._NA_45	_	CG	_	TT	AA	GG	_	AC	AG	GT	GG	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
1._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
2._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
3._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
4._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
5._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
6._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
7._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
8._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
9._GC-01-111-6-08	AA	CT	AA	CC	AC	AA	CC	CG	CC	AA	CC	CC	TT	CC
10._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
11._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
12._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
13._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
14._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
15._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC
16._NA_45	AA	CT	_	_	_	_	CC	CG	_	_	_	CC	TT	CC

	85	86	87	88	89	90	91	92
_Input profile	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
3._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-111-6-08	TT	AA	CC	CT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
12._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
13._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
14._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
15._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
16._NA_45	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: NA_45 GC-01-111-6-08

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._NA_45 GC-01-111-6-08

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

2._NA_45

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

3._NA_45

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

4._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

5._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 4

Dapeng Zhang, 2016

11._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 10

Dapeng Zhang, 2016

13._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 1 > FP

Dapeng Zhang, 2016

14._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 11 > F

Dapeng Zhang, 2016

15._NA_45

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1608 3 > FP

Dapeng Zhang, 2016

16._NA_45

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 673

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240