SNP Profiles of SCA 11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT__TT
14._GC-08-157-3-56
AT__CCCCAGAGTTTTCCTTAGTTTTTT
15._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
16._GC-08-157-3-56
ATCCCCCCAG__TTTTCCTTAGTTTTTT
17._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT__TTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
23._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
24._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC________CCTTAG__TT__
27._SCA_11
ATCCCCCC________CCTTAG__TT__
28._SCA_11
ATCCCCCC________CCTTAG__TT__
29._SCA_11
ATCCCCCC________CCTTAG__TT__
30._SCA_11
ATCCCCCC________CCTTAG__TT__
31._SCA_11
ATCCCCCC________CCTTAG__TT__
32._SCA_11
ATCCCCCC________CCTTAG__TT__
33._SCA_11
ATCCCCCC________CCTTAG__TT__
34._SCA_11
ATCCCCCC________CCTTAG__TT__
35._SCA_11
ATCCCCCC________CCTTAG__TT__
36._SCA_11
ATCCCCCC________CCTTAG__TT__
37._SCA_11
ATCCCCCC________CCTTAG__TT__
38._SCA_11
ATCCCCCC________CCTTAG__TT__
39._SCA_11
ATCCCCCC________CCTTAG__TT__
40._SCA_11
ATCCCCCC________CCTTAG__TT__
41._SCA_11
ATCCCCCC________CCTTAG__TT__
42._SCA_11
ATCCCCCC________CCTTAG__TT__
43._SCA_11
ATCCCCCC________CCTTAG__TT__
44._SCA_11
ATCCCCCC________CCTTAG__TT__
45._SCA_11
ATCCCCCC________CCTTAG__TT__
46._SCA_11
ATCCCCCC________CCTT____TT__
47._SCA_11
ATCCCCCC________CCTTAG__TT__
48._SCA_11
ATCCCCCC________CCTTAG______
49._SCA_11
AT__CCCC________CCTTAG__TT__
50._SCA_11
ATCCCCCC________CCTTAG__TT__
51._SCA_11
ATCCCCCC________CCTTAG__TT__
52._RUQ_1686
______CC____CT______________
53._RUQ_374
AACCCCCC________CCCTAA__TT__
54._SCA_11
AACCCCCC________CCTTAA__TT__
55._RUQ_374
____CCCC____CC__CC____TTTT__
56._RUQ_1686
ATCC__CCAGAG__AAGG__AGAAAAAA
57._RUQ_1686
______AA________CC______CT__
58._MITC-000057
AACC__CCGGAA__AAGG__AAAAAAAA
59._SCA_11
AAAATTCC________CTTTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
______GG____CC________AAAA__
27._SCA_11
______GG____CC________AAAA__
28._SCA_11
______GG____CC________AAAA__
29._SCA_11
______GG____CC________AAAA__
30._SCA_11
______GG____CC________AAAA__
31._SCA_11
______GG____CC________AAAA__
32._SCA_11
______GG____CC________AAAA__
33._SCA_11
______GG____CC________AAAA__
34._SCA_11
______GG____CC________AAAA__
35._SCA_11
______GG____CC________AAAA__
36._SCA_11
______GG____CC________AAAA__
37._SCA_11
______GG____CC________AAAA__
38._SCA_11
______GG____CC________AAAA__
39._SCA_11
______GG____CC________AAAA__
40._SCA_11
______GG____CC________AAAA__
41._SCA_11
______GG____CC________AAAA__
42._SCA_11
______GG____CC________AAAA__
43._SCA_11
______GG____CC________AAAA__
44._SCA_11
______GG____CC________AAAA__
45._SCA_11
______GG____CC________AAAA__
46._SCA_11
______GG____CC________AAAA__
47._SCA_11
______GG____CC________AAAA__
48._SCA_11
______GG____CC________AAAA__
49._SCA_11
______GG____CC________AAAA__
50._SCA_11
______GG____CC________AAAA__
51._SCA_11
______GG____CC________AAAA__
52._RUQ_1686
______GGCC__________________
53._RUQ_374
______GG____CC________AAAA__
54._SCA_11
______GG____CC________AAAA__
55._RUQ_374
__________GG________GG__AAGG
56._RUQ_1686
ATAAAAGGGG__CCGGAAAGGGAAAACC
57._RUQ_1686
____GG____GG__CT____GG__ATCC
58._MITC-000057
AAACAAGGGG__CCGGAGGGGGAAAA__
59._SCA_11
______AA____GG________TTAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
13._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
14._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
15._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
16._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
17._GC-08-157-3-56
CCTTTTTTGGCG__AAGGTTTTAGCCGG
18._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCC__
19._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
20._GC-08-157-3-56
__TTTTTTGGCGCCAAGGTTTTAGCCGG
21._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
22._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
23._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTT__AGCCGG
24._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
25._GC-08-157-3-56
__TTTTTTGGCGCCAAGGTTTTAGCCGG
26._SCA_11
CCTT______CG__AAGG____AG____
27._SCA_11
CCTT______CG__AAGG____AG____
28._SCA_11
CCTT______CG__AAGG____AG____
29._SCA_11
CCTT______CG__AAGG____AG____
30._SCA_11
CCTT______CG__AAGG____AG____
31._SCA_11
CCTT______CG__AAGG____AG____
32._SCA_11
CCTT______CG__AAGG____AG____
33._SCA_11
CCTT______CG__AAGG____AG____
34._SCA_11
CCTT______CG__AAGG____AG____
35._SCA_11
CCTT______CG__AAGG____AG____
36._SCA_11
CCTT______CG__AAGG____AG____
37._SCA_11
CCTT______CG__AAGG____AG____
38._SCA_11
CCTT______CG__AAGG____AG____
39._SCA_11
CCTT______CG__AAGG____AG____
40._SCA_11
CCTT______CG__AAGG____AG____
41._SCA_11
CCTT______CG__AAGG____AG____
42._SCA_11
CCTT______CG__AAGG____AG____
43._SCA_11
CCTT______CG__AAGG____AG____
44._SCA_11
CCTT______CG__AAGG____AG____
45._SCA_11
CCTT______CG__AAGG____AG____
46._SCA_11
CCTT______CG__AAGG____AG____
47._SCA_11
__TT______CG__AAGG____AG____
48._SCA_11
CCTT______CG__AAGG____AG____
49._SCA_11
CCTT______CG__AAGG____AG____
50._SCA_11
CCTT______CG__AAGG____AG____
51._SCA_11
__TT______CG__AAGG____AG____
52._RUQ_1686
CC________CG__AA________CC__
53._RUQ_374
CCTT______CC__AAGG____AG____
54._SCA_11
CCTT______CC__AAGG____AA____
55._RUQ_374
CC______AGCCCCAAGG____AACC__
56._RUQ_1686
GGTTAAAAGGCGCCAACCAAAAAGGGGG
57._RUQ_1686
GG______GGGG________TT__CC__
58._MITC-000057
GGTTAAAAAGCCCCAACCAAAAAAGGGG
59._SCA_11
CGAA______CC__AATT____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAGAACCCCAAAAGGTTTT
1._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
2._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
3._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
4._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
5._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
6._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
7._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
8._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
9._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
10._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
11._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
12._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
13._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
14._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
15._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
16._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
17._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
18._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
19._GC-08-157-3-56
CCGGTTTTGGAG__CCCCAAAAGGTTTT
20._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
21._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
22._GC-08-157-3-56
CCGGTTTTGGAG__CCCCAAAAGGTTTT
23._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
24._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGG__TT
25._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
26._SCA_11
______TT__________________TT
27._SCA_11
______TT__________________TT
28._SCA_11
______TT__________________TT
29._SCA_11
______TT__________________TT
30._SCA_11
______TT__________________TT
31._SCA_11
______TT__________________TT
32._SCA_11
______TT__________________TT
33._SCA_11
______TT__________________TT
34._SCA_11
______TT__________________TT
35._SCA_11
______TT__________________TT
36._SCA_11
______TT__________________TT
37._SCA_11
______TT__________________TT
38._SCA_11
______TT__________________TT
39._SCA_11
______TT__________________TT
40._SCA_11
______TT__________________TT
41._SCA_11
______TT__________________TT
42._SCA_11
______TT__________________TT
43._SCA_11
______TT__________________TT
44._SCA_11
______TT__________________TT
45._SCA_11
______TT__________________TT
46._SCA_11
______TT__________________TT
47._SCA_11
______TT__________________TT
48._SCA_11
______TT__________________TT
49._SCA_11
______TT__________________TT
50._SCA_11
______TT__________________TT
51._SCA_11
______TT__________________TT
52._RUQ_1686
__________AG________________
53._RUQ_374
______TT__________________TT
54._SCA_11
______TT__________________TT
55._RUQ_374
__GGTT____AA____________CCTT
56._RUQ_1686
GGCC__AA__AGAAGG__AAAACCAGAA
57._RUQ_1686
____TT__AA________________CC
58._MITC-000057
GGCC__AA__AAAAGG__AAAACCGGAA
59._SCA_11
______CC__________________CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
1._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
2._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
3._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
4._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
5._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
6._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
7._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
8._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
9._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
10._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
11._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
12._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
13._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
14._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
15._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAA__GGAA
16._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
17._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
18._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
19._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
20._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
21._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
22._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
23._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
24._GC-01-117-6-14
CCTT__CCCCTTCCCGGGAAAAGGGGAA
25._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
26._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
27._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
28._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
29._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
30._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
31._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
32._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
33._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
34._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
35._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
36._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
37._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
38._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
39._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
40._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
41._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
42._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
43._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
44._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
45._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
46._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
47._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
48._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
49._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
50._SCA_11
CC____CC__TTCCCG__AAAA__GG__
51._SCA_11
CC____CC__TTCCCG__AAAAGGGG__
52._RUQ_1686
____AG____________AAAA__GGAA
53._RUQ_374
CC____CG__TTCCCG__ACAGGGGG__
54._SCA_11
CC____CG__TTCCCG__ACAGGGGG__
55._RUQ_374
__TT__CGCCTTCC__GGCCAGGGGGAA
56._RUQ_1686
GGAAAGGGGGAACCCGGGAAAACCCCAA
57._RUQ_1686
______CGCC__AA__GGACAG______
58._MITC-000057
GGAAAGCGGGAACCCGGGACAGCCCCAA
59._SCA_11
CT____CC__CTACGG__CCAATTGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCAACTCCGGCCCCAAAACCCCAACC
1._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
2._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
3._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
4._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
5._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
6._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
7._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
8._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
9._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
10._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
11._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
12._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
13._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
14._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
15._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
16._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
17._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
18._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
19._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
20._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
21._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
22._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
23._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
24._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
25._GC-08-157-3-56
CTCCAA__CCGGCCCCAAAACCCCAACC
26._SCA_11
____AACT__________AACC______
27._SCA_11
____AACT__________AACC______
28._SCA_11
____AACT__________AACC______
29._SCA_11
____AACT__________AACC______
30._SCA_11
____AACT__________AACC______
31._SCA_11
____AACT__________AACC______
32._SCA_11
____AACT__________AACC______
33._SCA_11
____AACT__________AACC______
34._SCA_11
____AACT__________AACC______
35._SCA_11
____AACT__________AACC______
36._SCA_11
____AACT__________AACC______
37._SCA_11
____AACT__________AACC______
38._SCA_11
____AACT__________AACC______
39._SCA_11
____AACT__________AACC______
40._SCA_11
____AACT__________AACC______
41._SCA_11
____AACT__________AACC______
42._SCA_11
____AACT__________AACC______
43._SCA_11
____AACT__________AACC______
44._SCA_11
____AACT__________AACC______
45._SCA_11
____AACT__________AACC______
46._SCA_11
____AACT__________AACC______
47._SCA_11
____AACT__________AACC______
48._SCA_11
____AACT__________AACC______
49._SCA_11
____AACT__________AACC______
50._SCA_11
____AACT__________AACC______
51._SCA_11
____AA____________AACC______
52._RUQ_1686
____AG____________AACC____CC
53._RUQ_374
____GGCC__________AACC______
54._SCA_11
____GGCC__________AACC______
55._RUQ_374
__________________AACC____CC
56._RUQ_1686
______AGCCGGCCCC__AAGGGGAACC
57._RUQ_1686
__CG________________GG______
58._MITC-000057
______GGCCGGCCCC__AAGGGGAACC
59._SCA_11
____AATT__________CCGG______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
1._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
2._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
3._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
4._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
5._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
6._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
7._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
8._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
9._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
10._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
11._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
12._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
13._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
14._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
15._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
16._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
17._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
18._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
19._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
20._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
21._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
22._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
23._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
24._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
25._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
26._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
27._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
28._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
29._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
30._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
31._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
32._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
33._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
34._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
35._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
36._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
37._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
38._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
39._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
40._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
41._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
42._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
43._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
44._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
45._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
46._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
47._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
48._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
49._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
50._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
51._SCA_11
TTCCCC__GG__TTGGCC____X_XX_XX_X
52._RUQ_1686
____CC____CC__GG______X_XX_XX_X
53._RUQ_374
TTCCCC__GG__CTGTCT____X_XX_XX_X
54._SCA_11
TTCCCC__GG__CTGTCT____X_XX_XX_X
55._RUQ_374
TT______GGCCCTGT______X_XX_XX_X
56._RUQ_1686
AAGG__GG____AACCGGAAGGX_XX_XX_X
57._RUQ_1686
__CT__________________X_XX_XX_X
58._MITC-000057
AAGG__GG____AGACAGAAGGX_XX_XX_X
59._SCA_11
CCCTTT__AG__CTGGTT____X_XX_XX_X

Input profile: SCA_11 GC-01-117-6-14

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._SCA_11 GC-01-117-6-14

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

4._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
95 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

13._SCA_11 GC-01-117-6-14

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_1686

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

53._SCA_11 RUQ_374

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

54._SCA_11

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

55._SCA_11 RUQ_374

82.1 %
42 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

56._SCA_11 RUQ_1686

50.6 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

57._SCA_11 RUQ_1686

50 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

58._SCA_11 MITC-000057

43.8 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

59._SCA_11

40 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240