SNP Profiles of NA-95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACAGAGCTCCCCCTGGCTCCTT
1._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
2._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
3._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
4._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
5._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
6._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
7._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
8._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
9._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
10._GC-08-168-4-11
AA____ACAGAGCTCCCCCTGGCTCCTT
11._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
12._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
13._NA_95
AAAATTAC________CCCTGG__CC__
14._NA_95
AAAATTAC________CCCTGG__CC__
15._NA_95
AAAATTAC________CCCTGG__CC__
16._NA_95
AAAATTAC________CCCTGG__CC__
17._NA_95
AAAATTAC________CCCTGG__CC__
18._NA_95
AAAATTAC________CCCTGG__CC__
19._NA_95
AAAATTAC________CCCTGG__CC__
20._NA_95
AAAATTAC________CCCTGG__CC__
21._NA_95
AAAATTAC________CCCTGG__CC__
22._NA_95
AAAATTAC________CCCTGG__CC__
23._NA_95
AAAATTAC________CCCTGG__CC__
24._NA_95
AAAATTAC________CCCTGG__CC__
25._NA_95
AA____AC________CCCTGG__CC__
26._NA_95
AAAATTCC________CTTTGG__CC__
27._NA_95
AAAATTCC________CTTTGG__CC__
28._GC-08-168-4-11
AAAATTCC__GGCCCCCTTTGGTTCCCC
29._GC-01-122-6-19
AAAATTCCGGGGCCCCCTTTGGTTCCCC
30._NA_95
AACCTTAA________CCCCGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAAGGCGGGCTAGTTAGATATCG
1._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
2._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
3._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
4._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
5._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
6._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
7._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTAGATATCG
8._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
9._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT__ATATCG
10._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
11._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT__ATATCG
12._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTT__ATATCG
13._NA_95
______AA____GG________ATAT__
14._NA_95
______AA____GG________ATAT__
15._NA_95
______AA____GG________ATAT__
16._NA_95
______AA____GG________ATAT__
17._NA_95
______AA____GG________ATAT__
18._NA_95
______AA____GG________ATAT__
19._NA_95
______AA____GG________ATAT__
20._NA_95
______AA____GG________ATAT__
21._NA_95
______AA____GG________ATAT__
22._NA_95
______AA____GG________ATAT__
23._NA_95
______AA____GG________ATAT__
24._NA_95
______AA____GG________ATAT__
25._NA_95
______AA____GG________ATAT__
26._NA_95
______AA____GG________TTAA__
27._NA_95
______AA____GG________TTAA__
28._GC-08-168-4-11
ATCCAAAAGGCGGGTTAATTGGTTAACC
29._GC-01-122-6-19
ATCCAAAAGGCGGGTTAATTGGTTAACC
30._NA_95
______GG____GG________TTAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAACTGTAGCCCCAGTTGGGTAACCAG
1._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
2._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
3._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
4._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
5._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
6._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
7._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
8._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
9._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
10._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
11._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
12._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
13._NA_95
GGAA______CC__AGTT____AA____
14._NA_95
GGAA______CC__AGTT____AA____
15._NA_95
GGAA______CC__AGTT____AA____
16._NA_95
GGAA______CC__AGTT____AA____
17._NA_95
GGAA______CC__AGTT____AA____
18._NA_95
GGAA______CC__AGTT____AA____
19._NA_95
GGAA______CC__AGTT____AA____
20._NA_95
GGAA______CC__AGTT____AA____
21._NA_95
GGAA______CC__AGTT____AA____
22._NA_95
GGAA______CC__AGTT____AA____
23._NA_95
GGAA______CC__AGTT____AA____
24._NA_95
GGAA______CC__AGTT____AA____
25._NA_95
GGAA______CC__AGTT____AA____
26._NA_95
GGAA______CC__GGGT____AA____
27._NA_95
GGAA______CC__GGGT____AA____
28._GC-08-168-4-11
GGAATTGGAGCCAAGGGTGGTTAATTAA
29._GC-01-122-6-19
GGAATTGGAGCCAAGGGTGGTTAATTAA
30._NA_95
CGAT______GG__AGGT____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCTAAAGAGCTCCGGAGGGTTCC
1._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
2._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
3._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
4._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
5._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
6._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
7._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
8._GC-08-168-4-11
CCGTATCTAAAG__CTCCGGAGGGTTCC
9._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
10._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
11._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGG__CC
12._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
13._NA_95
______CT__________________CC
14._NA_95
______CT__________________CC
15._NA_95
______CT__________________CC
16._NA_95
______CT__________________CC
17._NA_95
______CT__________________CC
18._NA_95
______CT__________________CC
19._NA_95
______CT__________________CC
20._NA_95
______CT__________________CC
21._NA_95
______CT__________________CC
22._NA_95
______CT__________________CC
23._NA_95
______CT__________________CC
24._NA_95
______CT__________________CC
25._NA_95
______CT__________________CC
26._NA_95
______CC__________________CT
27._NA_95
______CC__________________CT
28._GC-08-168-4-11
CCTTAACCGGAGAGCTCCGGGGTTTTCT
29._GC-01-122-6-19
CCTTAACCGGAGAGCTCCGGGGTTTTCT
30._NA_95
______TT__________________CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGTAGCGCCCTACGGAGAATTGTGGCT
1._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
2._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
3._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
4._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
5._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
6._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
7._GC-01-122-6-19
CCGTAGCGCCCTACGGAGAATTGTGGCT
8._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
9._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
10._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
11._GC-08-168-4-11
CCGTAGCGCCCTACGGAGAATTGTGGCT
12._GC-01-122-6-19
CCGTAGCGCCCTACGG__AATTGTGGCT
13._NA_95
CC____CG__CTACGG__AATTGT____
14._NA_95
CC____CG__CTACGG__AATTGT____
15._NA_95
CC____CG__CTACGG__AATTGT____
16._NA_95
CC____CG__CTACGG__AATTGT____
17._NA_95
CC____CG__CTACGG__AATTGT____
18._NA_95
CC____CG__CTACGG__AATTGT____
19._NA_95
CC____CG__CTACGG__AATTGT____
20._NA_95
CC____CG__CTACGG__AATTGT____
21._NA_95
CC____CG__CTACGG__AATTGT____
22._NA_95
CC____CG__CTACGG__AATTGT____
23._NA_95
CC____CG__CTACGG__AATTGT____
24._NA_95
CC____CG__CTACGG__AATTGT____
25._NA_95
CC____CG__CTACGG__AATTGT____
26._NA_95
TT____CC__CCACGG__AGTTGG____
27._NA_95
TT____CC__CCACGG__AGTTGG____
28._GC-08-168-4-11
TTGTAGCCTTCCACGGGGAGTTGGGGTT
29._GC-01-122-6-19
TTGTAGCCTTCCACGGGGAGTTGGGGTT
30._NA_95
CC____CC__TTAAGG__AAGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTACAGACAAAACCCGCCTTACTT
1._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
2._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
3._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
4._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
5._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
6._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
7._GC-01-122-6-19
CCGGTTACAGACAAAACCCGCCTTACTT
8._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
9._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
10._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
11._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
12._GC-01-122-6-19
CCGGTTACAGACAAAACCCG__TTACTT
13._NA_95
__GGTT__________CCCG______TT
14._NA_95
__GGTT__________CCCG______TT
15._NA_95
__GGTT__________CCCG______TT
16._NA_95
__GGTT__________CCCG______TT
17._NA_95
__GGTT__________CCCG______TT
18._NA_95
__GGTT__________CCCG______TT
19._NA_95
__GGTT__________CCCG______TT
20._NA_95
__GGTT__________CCCG______TT
21._NA_95
__GGTT__________CCCG______TT
22._NA_95
__GGTT__________CCCG______TT
23._NA_95
__GGTT__________CCCG______TT
24._NA_95
__GGTT__________CCCG______TT
25._NA_95
__GGTT__________CCCG______TT
26._NA_95
__GGTT__________CCGG______TT
27._NA_95
__GGTT__________CCGG______TT
28._GC-08-168-4-11
CCGGTTAAAAACAAAACCGGCCAAAATT
29._GC-01-122-6-19
CCGGTTAAAAACAAAACCGGCCAAAATT
30._NA_95
__AACC__________CCCC______CC
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-122-6-19
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
11._GC-08-168-4-11
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-122-6-19
CTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
13._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
14._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
15._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
16._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
17._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
18._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
19._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
20._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
21._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
22._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
23._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
24._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
25._NA_95
CTTTAG__CTGTTT____X_XX_XX_XX_XX_X
26._NA_95
CTTTAA__CCTTTT____X_XX_XX_XX_XX_X
27._NA_95
CTTTAA__CCTTTT____X_XX_XX_XX_XX_X
28._GC-08-168-4-11
CTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
29._GC-01-122-6-19
CTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
30._NA_95
TTCCAA__CCTTTT____X_XX_XX_XX_XX_X

Input profile: NA_95 GC-01-122-6-19

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._NA_95 GC-01-122-6-19

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._NA_95 GC-08-168-4-11

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

13._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

14._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

15._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

16._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

17._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

18._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

20._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

21._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

22._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

23._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

24._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

25._NA_95

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

26._NA_95

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

27._NA_95

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

70.7 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._NA_95 GC-01-122-6-19

70.4 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

30._NA_95

56.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240