SNP Profiles of NA 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGGGCCCCCTTTGGTTCCCC
1._GC-08-168-4-11
AAAATTCC__GGCCCCCTTTGGTTCCCC
2._NA_95
AAAATTCC________CTTTGG__CC__
3._NA_95
AAAATTCC________CTTTGG__CC__
4._NA_95
AAAATTAC________CCCTGG__CC__
5._NA_95
AAAATTAC________CCCTGG__CC__
6._NA_95
AAAATTAC________CCCTGG__CC__
7._NA_95
AAAATTAC________CCCTGG__CC__
8._NA_95
AAAATTAC________CCCTGG__CC__
9._NA_95
AAAATTAC________CCCTGG__CC__
10._NA_95
AAAATTAC________CCCTGG__CC__
11._NA_95
AAAATTAC________CCCTGG__CC__
12._NA_95
AAAATTAC________CCCTGG__CC__
13._NA_95
AAAATTAC________CCCTGG__CC__
14._NA_95
AAAATTAC________CCCTGG__CC__
15._NA_95
AAAATTAC________CCCTGG__CC__
16._NA_95
AA____AC________CCCTGG__CC__
17._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
18._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
19._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
20._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
21._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
22._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
23._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
24._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
25._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
26._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
27._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
28._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
29._GC-08-168-4-11
AA____ACAGAGCTCCCCCTGGCTCCTT
30._NA_95
AACCTTAA________CCCCGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGTTAATTGGTTAACC
1._GC-08-168-4-11
ATCCAAAAGGCGGGTTAATTGGTTAACC
2._NA_95
______AA____GG________TTAA__
3._NA_95
______AA____GG________TTAA__
4._NA_95
______AA____GG________ATAT__
5._NA_95
______AA____GG________ATAT__
6._NA_95
______AA____GG________ATAT__
7._NA_95
______AA____GG________ATAT__
8._NA_95
______AA____GG________ATAT__
9._NA_95
______AA____GG________ATAT__
10._NA_95
______AA____GG________ATAT__
11._NA_95
______AA____GG________ATAT__
12._NA_95
______AA____GG________ATAT__
13._NA_95
______AA____GG________ATAT__
14._NA_95
______AA____GG________ATAT__
15._NA_95
______AA____GG________ATAT__
16._NA_95
______AA____GG________ATAT__
17._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT__ATATCG
18._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTT__ATATCG
19._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
20._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
21._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
22._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
23._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
24._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
25._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTAGATATCG
26._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT__ATATCG
27._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTAGATATCG
28._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
29._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
30._NA_95
______GG____GG________TTAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTGGAGCCAAGGGTGGTTAATTAA
1._GC-08-168-4-11
GGAATTGGAGCCAAGGGTGGTTAATTAA
2._NA_95
GGAA______CC__GGGT____AA____
3._NA_95
GGAA______CC__GGGT____AA____
4._NA_95
GGAA______CC__AGTT____AA____
5._NA_95
GGAA______CC__AGTT____AA____
6._NA_95
GGAA______CC__AGTT____AA____
7._NA_95
GGAA______CC__AGTT____AA____
8._NA_95
GGAA______CC__AGTT____AA____
9._NA_95
GGAA______CC__AGTT____AA____
10._NA_95
GGAA______CC__AGTT____AA____
11._NA_95
GGAA______CC__AGTT____AA____
12._NA_95
GGAA______CC__AGTT____AA____
13._NA_95
GGAA______CC__AGTT____AA____
14._NA_95
GGAA______CC__AGTT____AA____
15._NA_95
GGAA______CC__AGTT____AA____
16._NA_95
GGAA______CC__AGTT____AA____
17._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
18._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
19._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
20._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
21._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
22._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
23._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
24._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
25._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
26._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
27._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
28._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
29._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
30._NA_95
CGAT______GG__AGGT____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCGGAGAGCTCCGGGGTTTTCT
1._GC-08-168-4-11
CCTTAACCGGAGAGCTCCGGGGTTTTCT
2._NA_95
______CC__________________CT
3._NA_95
______CC__________________CT
4._NA_95
______CT__________________CC
5._NA_95
______CT__________________CC
6._NA_95
______CT__________________CC
7._NA_95
______CT__________________CC
8._NA_95
______CT__________________CC
9._NA_95
______CT__________________CC
10._NA_95
______CT__________________CC
11._NA_95
______CT__________________CC
12._NA_95
______CT__________________CC
13._NA_95
______CT__________________CC
14._NA_95
______CT__________________CC
15._NA_95
______CT__________________CC
16._NA_95
______CT__________________CC
17._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
18._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
19._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
20._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
21._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
22._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
23._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
24._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
25._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
26._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGG__CC
27._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
28._GC-08-168-4-11
CCGTATCTAAAG__CTCCGGAGGGTTCC
29._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
30._NA_95
______TT__________________CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGTAGCCTTCCACGGGGACAGTTGGGG
1._GC-08-168-4-11
TTGTAGCCTTCCACGGGGACAGTTGGGG
2._NA_95
TT____CC__CCACGG__ACAGTTGG__
3._NA_95
TT____CC__CCACGG__ACAGTTGG__
4._NA_95
CC____CG__CTACGG____AATTGT__
5._NA_95
CC____CG__CTACGG__CCAATTGT__
6._NA_95
CC____CG__CTACGG__CCAATTGT__
7._NA_95
CC____CG__CTACGG__CCAATTGT__
8._NA_95
CC____CG__CTACGG__CCAATTGT__
9._NA_95
CC____CG__CTACGG__CCAATTGT__
10._NA_95
CC____CG__CTACGG__CCAATTGT__
11._NA_95
CC____CG__CTACGG__CCAATTGT__
12._NA_95
CC____CG__CTACGG__CCAATTGT__
13._NA_95
CC____CG__CTACGG__CCAATTGT__
14._NA_95
CC____CG__CTACGG__CCAATTGT__
15._NA_95
CC____CG__CTACGG__CCAATTGT__
16._NA_95
CC____CG__CTACGG__CCAATTGT__
17._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
18._GC-01-122-6-19
CCGTAGCGCCCTACGG__CCAATTGTGG
19._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
20._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
21._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
22._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
23._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
24._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
25._GC-01-122-6-19
CCGTAGCGCCCTACGGAGCCAATTGTGG
26._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
27._GC-01-122-6-19
CCGTAGCGCCCTACGGAG__AATTGTGG
28._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
29._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
30._NA_95
CC____CC__TTAAGG__ACAAGGGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCCGGTTAAAAACAAAACCGGCCAAAA
1._GC-08-168-4-11
TTCCGGTTAAAAACAAAACCGGCCAAAA
2._NA_95
____GGTT__________CCGG______
3._NA_95
____GGTT__________CCGG______
4._NA_95
____GGTT__________CCCG______
5._NA_95
____GGTT__________CCCG______
6._NA_95
____GGTT__________CCCG______
7._NA_95
____GGTT__________CCCG______
8._NA_95
____GGTT__________CCCG______
9._NA_95
____GGTT__________CCCG______
10._NA_95
____GGTT__________CCCG______
11._NA_95
____GGTT__________CCCG______
12._NA_95
____GGTT__________CCCG______
13._NA_95
____GGTT__________CCCG______
14._NA_95
____GGTT__________CCCG______
15._NA_95
____GGTT__________CCCG______
16._NA_95
____GGTT__________CCCG______
17._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
18._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCG__TTAC
19._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
20._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
21._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
22._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
23._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
24._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
25._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCGCCTTAC
26._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
27._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCGCCTTAC
28._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
29._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
30._NA_95
____AACC__________CCCC______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
1._GC-08-168-4-11
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
2._NA_95
TTCTTT__AA__CCTTTT____X_XX_XX_X
3._NA_95
TTCTTT__AA__CCTTTT____X_XX_XX_X
4._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
5._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
6._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
7._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
8._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
9._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
10._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
11._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
12._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
13._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
14._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
15._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
16._NA_95
TTCTTT__AG__CTGTTT____X_XX_XX_X
17._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
18._GC-01-122-6-19
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
19._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
20._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
21._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
22._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
23._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
24._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
25._GC-01-122-6-19
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
26._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
27._GC-01-122-6-19
TTCTTT__AGCTCTGTTTAAGGX_XX_XX_X
28._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
29._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
30._NA_95
CCTTCC__AA__CCTTTT____X_XX_XX_X

Input profile: NA_95 GC-01-122-6-19

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

3._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

4._NA_95

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

5._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

6._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

7._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

8._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

9._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

10._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

11._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

12._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

13._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

14._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

15._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

16._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

17._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._NA_95 GC-01-122-6-19

70.7 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._NA_95 GC-08-168-4-11

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._NA_95 GC-01-122-6-19

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._NA_95 GC-08-168-4-11

70.4 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

27._NA_95 GC-01-122-6-19

70.4 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._NA_95 GC-08-168-4-11

70.2 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._NA_95 GC-08-168-4-11

69.9 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._NA_95

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240