SNP Profiles of GU-125C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_125_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GU_125_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GU_125_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GU_125_/C___
__CCCCGGGGCCCCCCCCGGTTCCTTAA
5._GU_125_/C___
AACCCCGGGGCCCCCCCCGGTTCCTT__
6._GU_125_/C___
AACCCC________CCCCGG__CC____
7._GU_125_/C___
AACCCC________CCCCGG__CC____
8._GU_125_/C___
AACCCC________CCCCGG__CC____
9._GU_125_/C___
AACCCC________CCCCGG__CC____
10._GU_125_/C___
AACCCC________CCCCGG__CC____
11._GU_125_/C___
AACCCC________CCCCGG__CC____
12._GU_125_/C___
__CCCC________CCCCGG__CC____
13._GU_125_/C___
__CCAC____CC__CC____TTCC____
14._GU_125_/C___
AACCAC________CCCCGG__CC____
15._GU_125_/C___
AACCAC________CCCCGG__CC____
16._GU_125_/C___
____AC____CC________________
17._GU_125_/C___
AA__CCGGGG__GGGG__GGAAGGAATT
18._GU_125_/C___
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGAAAACCGGAA
1._GU_125_/C___
CCGGGGCCGGTTAATTGGAAAACCGGAA
2._GU_125_/C___
CCGGGGCCGGTTAATTGGAAAACCGGAA
3._GU_125_/C___
CCGGGGCCGGTTAATTGGAAAACCGGAA
4._GU_125_/C___
CCGGGGCCGGTTAATTGGAAAACCGGAA
5._GU_125_/C___
CCGGGGCCGGTTAATTGGAAAACCGGAA
6._GU_125_/C___
__GG____GG________AAAA__GGAA
7._GU_125_/C___
__GG____GG________AAAA__GGAA
8._GU_125_/C___
__GG____GG________AAAA__GGAA
9._GU_125_/C___
__GG____GG________AAAA__GGAA
10._GU_125_/C___
__GG____GG________AAAA__GGAA
11._GU_125_/C___
__GG____GG________AAAA__GGAA
12._GU_125_/C___
__GG____GG________AAAA__GGAA
13._GU_125_/C___
______CC________GG__AACCGG__
14._GU_125_/C___
__GG____GG________ATAA__GGAA
15._GU_125_/C___
__GG____GG________ATAA__GGAA
16._GU_125_/C___
__GGCT__________________GG__
17._GU_125_/C___
CCGGCC__GGAAAAAAGGAAAAGGCCAA
18._GU_125_/C___
CCGGCC__GGAGGGAAGGATAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_125_/C___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GU_125_/C___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GU_125_/C___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GU_125_/C___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GU_125_/C___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GU_125_/C___
______CC__GGTT____GG________
7._GU_125_/C___
______CC__GGTT____GG________
8._GU_125_/C___
______CC__GGTT____GG________
9._GU_125_/C___
______CC__GGTT____GG________
10._GU_125_/C___
______CC__GGTT____GG________
11._GU_125_/C___
______CC__GGTT____GG________
12._GU_125_/C___
______CC__GGTT____GG________
13._GU_125_/C___
____GGCCCCAGTT____GGCC____GG
14._GU_125_/C___
______CC__AGTT____GG________
15._GU_125_/C___
______CC__AGGT____GG________
16._GU_125_/C___
______CC__AG________CC______
17._GU_125_/C___
AAAAGGCCCCGGAACCCCGGGGGGGGCC
18._GU_125_/C___
AAAAGGCCCCAGAACCCCGGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_125_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GU_125_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_125_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GU_125_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GU_125_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GU_125_/C___
__TT__________________TTCC__
7._GU_125_/C___
__TT__________________TTCC__
8._GU_125_/C___
__TT__________________TTCC__
9._GU_125_/C___
__TT__________________TTCC__
10._GU_125_/C___
__TT__________________TTCC__
11._GU_125_/C___
__TT__________________TTCC__
12._GU_125_/C___
__TT__________________TTCC__
13._GU_125_/C___
TT____GG____________TTTT__TT
14._GU_125_/C___
__TT__________________TTCC__
15._GU_125_/C___
__TT__________________TTCC__
16._GU_125_/C___
______GG____________________
17._GU_125_/C___
__AA__GGAAGG__GGGGAAAAAAGGAA
18._GU_125_/C___
__AA__GGAAGG__GGGGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_125_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GU_125_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GU_125_/C___
GGCCCCCCAAGGGGAAGG__GGAACCCC
4._GU_125_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GU_125_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
7._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
8._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
9._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
10._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
11._GU_125_/C___
__CC__CCAAGG__AAGG__GG______
12._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
13._GU_125_/C___
__CCCCCCAA__GGAAGGGGGGAA____
14._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
15._GU_125_/C___
__CC__CCAAGG__AAGGGGGG______
16._GU_125_/C___
GG____________AAGG__GGAA____
17._GU_125_/C___
GGGGGGGGAAGGGGAAGGCCCCAA____
18._GU_125_/C___
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCAAAGCCCCGGAACCCCTTAACCCC
1._GU_125_/C___
AACCAAAGCCCCGGAACCCCTTAACCCC
2._GU_125_/C___
AACCAAAGCCCCGGAACCCCTTAACCCC
3._GU_125_/C___
AACCAAAGCCCCGGAACCCCTTAACCCC
4._GU_125_/C___
AACCAAAGCCCCGGAACCCCTTAACCCC
5._GU_125_/C___
AACCAAAGCCCCGGAACCCCTTAACCCC
6._GU_125_/C___
AACC__________AACC______CCCC
7._GU_125_/C___
AACC__________AACC______CCCC
8._GU_125_/C___
AACC__________AACC______CCCC
9._GU_125_/C___
AACC__________AACC______CCCC
10._GU_125_/C___
AACC__________AACC______CCCC
11._GU_125_/C___
AACC__________AACC______CCCC
12._GU_125_/C___
AACC__________AACC______CCCC
13._GU_125_/C___
______________AACG____AACC__
14._GU_125_/C___
AGCC__________AACG______CCCC
15._GU_125_/C___
AGCC__________AACG______CCCC
16._GU_125_/C___
AG____________AACG____AA____
17._GU_125_/C___
__GGAAAGCCCC__AAGGGGTTAAGGGG
18._GU_125_/C___
__GGACAACCCC__AACGGGTTAAGGGG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_125_/C___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GU_125_/C___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GU_125_/C___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GU_125_/C___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GU_125_/C___
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
7._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
8._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
9._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
10._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_125_/C___
____GGCCCCTT______X_XX_XX_XX_XX_X
14._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_125_/C___
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_125_/C___
CC____CC__TT______X_XX_XX_XX_XX_X
17._GU_125_/C___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
18._GU_125_/C___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_125_/C GC-01-138-7-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._GU_125_/C GC-01-138-7-17

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

2._GU_125_/C GC-01-138-7-17

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

7._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

8._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

9._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016

10._GU_125_/C

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

11._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

12._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.6 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_125_/C RUQ_188

44.3 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240