SNP Profiles of SC 9 [UNK] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CC	AA	GG	AA	TT	CC	CT	CC	GG	CT	CT	TT
1._AMAZ_5_/2___	AA	AA	CC	AA	GG	AA	TT	CC	CT	CC	GG	CT	CT	TT
2._AMAZ_5_/2___	AA	AA	CC	AA	GG	AA	TT	CC	CT	CC	GG	CT	CT	TT
3._AMAZ_5_/2___	AA	AA	CC	AA	GG	AA	TT	CC	CT	CC	GG	CT	CT	TT
4._AMAZ_5_/2___	AA	AA	CC	AA	__	__	__	__	CT	CC	GG	__	CT	__
5._AMAZ_5_/2___	AA	AA	CC	AA	__	__	__	__	CT	CC	GG	__	CT	__
6._AMAZ_5_/2___	AA	AA	CC	AA	__	__	__	__	CT	CC	GG	__	CT	__
7._AMAZ_5_/2___	AA	AA	CC	AA	__	__	__	__	CT	CC	GG	__	CT	__
8._AMAZ_5_/2___	__	__	CC	AA	__	__	TT	__	CT	__	__	CT	TT	__
9._AMAZ_5_/2___	AA	AA	CC	AA	__	__	__	__	TT	CC	GG	__	CT	__
10._AMAZ_5_/2___	__	__	__	AA	__	__	TT	__	__	__	__	__	__	__
11._AMAZ_5_/2___	AA	AA	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AC	AA	AG	CC	CC	GG	CC	AA	TT	GG	AA	AA	GG
1._AMAZ_5_/2___	AT	AC	AA	AG	CC	CC	GG	CC	AA	TT	GG	AA	AA	GG
2._AMAZ_5_/2___	AT	AC	AA	AG	CC	CC	GG	CC	AA	TT	GG	AA	AA	GG
3._AMAZ_5_/2___	AT	AC	AA	AG	CC	CC	GG	CC	AA	TT	GG	AA	AA	GG
4._AMAZ_5_/2___	__	__	__	AG	__	__	GG	__	__	__	__	AA	AA	__
5._AMAZ_5_/2___	__	__	__	AG	__	__	GG	__	__	__	__	AA	AA	__
6._AMAZ_5_/2___	__	__	__	AG	__	__	GG	__	__	__	__	AA	AA	__
7._AMAZ_5_/2___	__	__	__	AG	__	__	GG	__	__	__	__	AA	AA	__
8._AMAZ_5_/2___	__	__	__	__	__	CC	__	__	__	__	GG	__	AA	GG
9._AMAZ_5_/2___	__	__	__	AG	__	__	GG	__	__	__	__	AA	AA	__
10._AMAZ_5_/2___	__	__	__	AG	TT	__	__	__	__	__	__	__	__	__
11._AMAZ_5_/2___	__	__	__	AA	__	__	GG	__	__	__	__	TT	AA	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AA	TT	GG	GG	GG	CC	AA	TT	GG	TT	GG	CT	GG
1._AMAZ_5_/2___	CC	AA	TT	GG	GG	GG	CC	AA	TT	GG	TT	GG	CT	GG
2._AMAZ_5_/2___	CC	AA	TT	GG	GG	GG	CC	AA	TT	GG	TT	GG	CT	GG
3._AMAZ_5_/2___	CC	AA	TT	GG	GG	GG	CC	AA	TT	GG	TT	GG	CT	GG
4._AMAZ_5_/2___	CC	AA	__	__	__	GG	__	AA	TT	__	__	GG	__	__
5._AMAZ_5_/2___	CC	AA	__	__	__	GG	__	AA	TT	__	__	GG	__	__
6._AMAZ_5_/2___	CC	AA	__	__	__	GG	__	AA	TT	__	__	GG	__	__
7._AMAZ_5_/2___	CC	AA	__	__	__	GG	__	AA	TT	__	__	GG	__	__
8._AMAZ_5_/2___	CC	__	__	__	GG	GG	CC	AA	TT	__	__	GG	CT	__
9._AMAZ_5_/2___	CC	AA	__	__	__	GG	__	AA	TT	__	__	GG	__	__
10._AMAZ_5_/2___	CC	__	__	__	__	GG	__	AA	__	__	__	__	CT	__
11._AMAZ_5_/2___	GG	AA	__	__	__	CC	__	GG	TT	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	TT	TT	TT
1._AMAZ_5_/2___	CC	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	TT	TT	TT
2._AMAZ_5_/2___	CC	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	TT	TT	TT
3._AMAZ_5_/2___	CC	GG	TT	TT	AA	GG	AA	CC	AC	GG	AA	TT	TT	TT
4._AMAZ_5_/2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	TT
5._AMAZ_5_/2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	TT
6._AMAZ_5_/2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	TT
7._AMAZ_5_/2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	TT
8._AMAZ_5_/2___	__	GG	TT	__	__	GG	__	__	__	__	__	__	TT	TT
9._AMAZ_5_/2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	TT
10._AMAZ_5_/2___	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
11._AMAZ_5_/2___	__	__	__	CC	__	__	__	__	__	__	__	__	__	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	TT	GG	GG	CC	TT	AA	GG	GG	AA	AA	GG	GG	AA
1._AMAZ_5_/2___	CC	TT	GG	GG	CC	TT	AA	GG	GG	AA	AA	GG	GG	AA
2._AMAZ_5_/2___	CC	TT	GG	GG	CC	TT	AA	GG	GG	AA	AA	GG	GG	AA
3._AMAZ_5_/2___	CC	TT	GG	GG	CC	TT	AA	GG	GG	AA	AA	GG	GG	AA
4._AMAZ_5_/2___	CC	__	__	GG	__	TT	AA	GG	__	AA	AA	GG	GG	__
5._AMAZ_5_/2___	CC	__	__	GG	__	TT	AA	GG	__	AA	AA	GG	GG	__
6._AMAZ_5_/2___	CC	__	__	GG	__	TT	AA	GG	__	AA	AA	GG	GG	__
7._AMAZ_5_/2___	CC	__	__	GG	__	TT	AA	GG	__	AA	AA	GG	GG	__
8._AMAZ_5_/2___	__	TT	GG	GG	CC	TT	AA	__	GG	AA	AA	GG	GG	AA
9._AMAZ_5_/2___	CC	__	__	GG	__	TT	AA	GG	__	AA	AA	GG	GG	__
10._AMAZ_5_/2___	__	__	GG	__	__	__	__	__	__	AA	AA	__	GG	AA
11._AMAZ_5_/2___	TT	__	__	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	GG	AA	CC	AC	AG	AC	CC	AG	CC	CC	CC	AT	CC
1._AMAZ_5_/2___	TT	GG	AA	CC	AC	AG	AC	CC	AG	CC	CC	CC	AT	CC
2._AMAZ_5_/2___	TT	GG	AA	CC	AC	AG	AC	CC	AG	CC	CC	CC	AT	CC
3._AMAZ_5_/2___	TT	GG	AA	CC	AC	AG	AC	CC	AG	CC	CC	CC	AT	CC
4._AMAZ_5_/2___	__	__	AA	CC	__	__	__	__	__	CC	CC	__	__	__
5._AMAZ_5_/2___	__	__	AA	CC	__	__	__	__	__	CC	CC	__	__	__
6._AMAZ_5_/2___	__	__	AA	CC	__	__	__	__	__	CC	CC	__	__	__
7._AMAZ_5_/2___	__	__	AA	CC	__	__	__	__	__	CC	CC	__	__	__
8._AMAZ_5_/2___	__	__	__	__	__	__	__	__	__	CC	CC	__	__	CC
9._AMAZ_5_/2___	__	__	AA	CC	__	__	__	__	__	CC	CC	__	__	__
10._AMAZ_5_/2___	__	__	AA	__	__	__	__	__	__	CC	CC	__	__	CC
11._AMAZ_5_/2___	__	__	AA	TT	__	__	__	__	__	CC	GG	__	__	__

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	CT	CC	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
1._AMAZ_5_/2___	CT	CC	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
2._AMAZ_5_/2___	CT	CC	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
3._AMAZ_5_/2___	CT	CC	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X
4._AMAZ_5_/2___	CT	CC	CC	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
5._AMAZ_5_/2___	CT	CC	CC	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
6._AMAZ_5_/2___	CT	CC	CC	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
7._AMAZ_5_/2___	CT	CC	CC	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
8._AMAZ_5_/2___	CT	__	__	__	AA	CC	TT	TT	__	__	__	X_X	X_X	X_X
9._AMAZ_5_/2___	CT	CC	CC	__	AA	__	TT	TT	TT	__	__	X_X	X_X	X_X
10._AMAZ_5_/2___	__	__	CC	__	__	CC	__	TT	__	__	__	X_X	X_X	X_X
11._AMAZ_5_/2___	TT	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X

Input profile: AMAZ_5_/2 GC-03-008-1-08

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._AMAZ_5_/2 GC-03-008-1-08

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._AMAZ_5_/2 GC-03-008-1-08

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

3._AMAZ_5_/2 GC-03-008-1-08

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

4._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

5._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

6._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

7._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

8._AMAZ_5_/2 RUQ_93

98.8 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._AMAZ_5_/2 RUQ_93

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._AMAZ_5_/2 RUQ_93

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Cri
0.063 IMC
0.441 LCT
0.245 Nan
0.200

11._AMAZ_5_/2

50 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240