SNP Profiles of MXC 67   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGAGCTCCCTTTGGTTCCCT
1._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
2._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
3._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
4._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
5._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
6._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
7._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
8._GC-05-131-3-33
AAAACTAAGGAGCTCCCTTTGGTTCCCT
9._GC-05-131-3-33
AAAACTAAGGAGCTCCCTTTGGTTCCCT
10._MXC_67
AAAACTAA________CTTTGG__CC__
11._MXC_67
AAAACTAA________CTTTGG__CC__
12._MXC_67
AAAACTAA________CTTTGG__CC__
13._MXC_67
AAAACTAA________CTTTGG__CC__
14._MXC_67
AAAACTAA________CTTTGG__CC__
15._MXC_67
AAAACTAA________CTTTGG__CC__
16._MXC_67
AAAACTAA________CTTTGG__CC__
17._MXC_67
AAAACTAA________CTTTGG__CC__
18._MXC_67
AAAACTAA________CTTTGG__CC__
19._MXC_67
AAAACTAA________CTTTGG__CC__
20._RUQ_104
AAAACTAA________CTCTGG__CC__
21._RUQ_104
______AA____CC______________
22._MXC_67
ATACCTCC________CTTTAG__CT__
23._RUQ_104
AAAA__AAGGAG__GGAG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCCGGTTAGTTATATCGCG
1._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
2._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
3._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
4._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
5._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
6._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
7._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTATATCGCG
8._GC-05-131-3-33
ATCCAAAAGGCCGGTTAGTTATATCGCG
9._GC-05-131-3-33
ATCCAAAAGGCCGGTTAGTTATATCGCG
10._MXC_67
______AA____GG______ATAT__CG
11._MXC_67
______AA____GG______ATAT__CG
12._MXC_67
______AA____GG______ATAT__CG
13._MXC_67
______AA____GG______ATAT__CG
14._MXC_67
______AA____GG______ATAT__CG
15._MXC_67
______AA____GG______ATAT__CG
16._MXC_67
______AA____GG______ATAT__CG
17._MXC_67
______AA____GG______ATAT__CG
18._MXC_67
______AA____GG______ATAT__CG
19._MXC_67
______AA____GG______ATAT__CG
20._RUQ_104
______AA____GG______ATAT__CG
21._RUQ_104
______AATT________________CG
22._MXC_67
______AG____CG______ATAA__CG
23._RUQ_104
ATCCAAAACC__GGAAAAAAATATCGCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
5._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
6._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
7._GC-03-014-2-02
AACTGTAGCCACAGGTGGGTAGCCAACC
8._GC-05-131-3-33
AACTGTAGCCACAGGTGGGTAGCCAACC
9._GC-05-131-3-33
AACTGTAGCCACAGGTGGGTAGCCAACC
10._MXC_67
AA______CC__AGGT____AG______
11._MXC_67
AA______CC__AGGT____AG______
12._MXC_67
AA______CC__AGGT____AG______
13._MXC_67
AA______CC__AGGT____AG______
14._MXC_67
AA______CC__AGGT____AG______
15._MXC_67
AA______CC__AGGT____AG______
16._MXC_67
AA______CC__AGGT____AG______
17._MXC_67
AA______CC__AGGT____AG______
18._MXC_67
AA______CC__AGGT____AG______
19._MXC_67
AA______CC__AGGT____AG______
20._RUQ_104
AA______CC__AGGT____AG______
21._RUQ_104
________CC__AG________CC____
22._MXC_67
AT______CC__AAGT____AA______
23._RUQ_104
AAAGACAGCCACAGACCCACAGGGAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AACCGGAAGGTTCCGGGGGGTTCCCCTT
1._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
2._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
3._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
4._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
5._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
6._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
7._GC-03-014-2-02
AACCGGAAGGTTCCGGGGGGTTCCCCTT
8._GC-05-131-3-33
AACCGGAAGGTTCCGGGGGGTTCCCCTT
9._GC-05-131-3-33
AACC__AAGGTTCCGGGGGGTTCCCCTT
10._MXC_67
__CC__________________CCCC__
11._MXC_67
__CC__________________CCCC__
12._MXC_67
__CC__________________CCCC__
13._MXC_67
__CC__________________CCCC__
14._MXC_67
__CC__________________CCCC__
15._MXC_67
__CC__________________CCCC__
16._MXC_67
__CC__________________CCCC__
17._MXC_67
__CC__________________CCCC__
18._MXC_67
__CC__________________CCCC__
19._MXC_67
__CC__________________CCCC__
20._RUQ_104
__CC__________________CCCC__
21._RUQ_104
______AA____________________
22._MXC_67
__CT__________________CTCT__
23._RUQ_104
__GG__AAAGAA__GGGGCCAAGGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGCCCCCCGGAGAAGGGGTTAACCCC
1._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
2._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
3._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
4._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
5._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
6._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
7._GC-03-014-2-02
AAGGCCCCCCGGAGAAGGGGTTAACCCC
8._GC-05-131-3-33
AAGGCCCCCCGGAGAAGGGGTTAACCCC
9._GC-05-131-3-33
AAGGCCCCCCGGAGAAGGGGTTAACCCC
10._MXC_67
__GG__CCCCGG__AAGGGGTT______
11._MXC_67
__GG__CCCCGG__AAGGGGTT______
12._MXC_67
__GG__CCCCGG__AAGGGGTT______
13._MXC_67
__GG__CCCCGG__AAGGGGTT______
14._MXC_67
__GG__CCCCGG__AAGGGGTT______
15._MXC_67
__GG__CCCCGG__AAGGGGTT______
16._MXC_67
__GG__CCCCGG__AAGGGGTT______
17._MXC_67
__GG__CCCCGG__AAGGGGTT______
18._MXC_67
__GG__CCCCGG__AAGGGGTT______
19._MXC_67
__GG__CCCCGG__AAGGGGTT______
20._RUQ_104
__GG__CCCCGG__AAGGGGTT______
21._RUQ_104
AA____________AAGG__TTAA____
22._MXC_67
______CTACCG__AAAGGTGG______
23._RUQ_104
AACCGGGGCCGGAGAAGGCCAAAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTAAAGACAAGGCCCGCTATACTTTTCT
1._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
2._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
3._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
4._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
5._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
6._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
7._GC-03-014-2-02
TTAAAGACAAGGCCCGCTATACTTTTCT
8._GC-05-131-3-33
__AAAGACAAGGCCCGCTATACTTTTCT
9._GC-05-131-3-33
TTAAAGACAAGGCCCGCTATACTTTTCT
10._MXC_67
TT__________CCCG______TTTTCT
11._MXC_67
TT__________CCCG______TTTTCT
12._MXC_67
TT__________CCCG______TTTTCT
13._MXC_67
TT__________CCCG______TTTTCT
14._MXC_67
TT__________CCCG______TTTTCT
15._MXC_67
TT__________CCCG______TTTTCT
16._MXC_67
TT__________CCCG______TTTTCT
17._MXC_67
TT__________CCCG______TTTTCT
18._MXC_67
TT__________CCCG______TTTTCT
19._MXC_67
____________CCCG______TTTTCT
20._RUQ_104
TT__________CCCG______CTTTCT
21._RUQ_104
____________CCCG____AC____CT
22._MXC_67
CT__________ACCG______TTCTCT
23._RUQ_104
AAAAAGACAA__CCCCAGATACAAAA__
 85 86 87 88 89 90 91 92       
_Input profile
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
1._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
2._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
3._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
4._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
5._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
6._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
7._GC-03-014-2-02
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
8._GC-05-131-3-33
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
9._GC-05-131-3-33
TTGGCCCCGGTTATGGX_XX_XX_XX_XX_XX_X
10._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
11._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
12._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
13._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
14._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
15._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
16._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
17._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
18._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
19._MXC_67
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
20._RUQ_104
__GG__CCGGTT____X_XX_XX_XX_XX_XX_X
21._RUQ_104
____CC__GG______X_XX_XX_XX_XX_XX_X
22._MXC_67
__GG__CTGTCT____X_XX_XX_XX_XX_XX_X
23._RUQ_104
AA____GG__AAATGGX_XX_XX_XX_XX_XX_X

Input profile: MXC_67 GC-03-014-2-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

5._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

7._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._MXC_67 GC-05-131-3-33

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._MXC_67 GC-05-131-3-33

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

10._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 1
 Dapeng Zhang, 2016

11._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 2
 Dapeng Zhang, 2016

12._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 5
 Dapeng Zhang, 2016

13._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 9
 Dapeng Zhang, 2016

14._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 16
 Dapeng Zhang, 2016

15._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 12 > F
 Dapeng Zhang, 2016

16._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 4 > FP
 Dapeng Zhang, 2016

17._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 6 > FP
 Dapeng Zhang, 2016

18._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 5 > FP
 Dapeng Zhang, 2016

19._MXC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 4
 Dapeng Zhang, 2016

20._MXC_67 RUQ_104

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._MXC_67 RUQ_104

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._MXC_67

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 12 X3 Y4
 Dapeng Zhang, 2016

23._MXC_67 RUQ_104

54.5 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240