SNP Profiles of MXC 67   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGAGCTCCCTTTGGTTCCCT
1._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
2._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
3._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
4._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
5._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
6._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
7._GC-05-131-3-33
AAAACTAAGGAGCTCCCTTTGGTTCCCT
8._GC-05-131-3-33
AAAACTAAGGAGCTCCCTTTGGTTCCCT
9._GC-03-014-2-02
AAAACTAAGGAGCTCCCTTTGGTTCCCT
10._MXC_67
AAAACTAA________CTTTGG__CC__
11._MXC_67
AAAACTAA________CTTTGG__CC__
12._MXC_67
AAAACTAA________CTTTGG__CC__
13._MXC_67
AAAACTAA________CTTTGG__CC__
14._MXC_67
AAAACTAA________CTTTGG__CC__
15._MXC_67
AAAACTAA________CTTTGG__CC__
16._MXC_67
AAAACTAA________CTTTGG__CC__
17._MXC_67
AAAACTAA________CTTTGG__CC__
18._MXC_67
AAAACTAA________CTTTGG__CC__
19._MXC_67
AAAACTAA________CTTTGG__CC__
20._RUQ_104
AAAACTAA________CTCTGG__CC__
21._RUQ_104
______AA____CC______________
22._MXC_67
ATACCTCC________CTTTAG__CT__
23._RUQ_104
AAAA__AAGGAG__GGAG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCCGGTTAGTTAAATATCG
1._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
2._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
3._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
4._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
5._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
6._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTTAAATATCG
7._GC-05-131-3-33
ATCCAAAAGGCCGGTTAGTTAAATATCG
8._GC-05-131-3-33
ATCCAAAAGGCCGGTTAGTTAAATATCG
9._GC-03-014-2-02
ATCCAAAAGGCCGGTTAGTT__ATATCG
10._MXC_67
______AA____GG________ATAT__
11._MXC_67
______AA____GG________ATAT__
12._MXC_67
______AA____GG________ATAT__
13._MXC_67
______AA____GG________ATAT__
14._MXC_67
______AA____GG________ATAT__
15._MXC_67
______AA____GG________ATAT__
16._MXC_67
______AA____GG________ATAT__
17._MXC_67
______AA____GG________ATAT__
18._MXC_67
______AA____GG________ATAT__
19._MXC_67
______AA____GG________ATAT__
20._RUQ_104
______AA____GG________ATAT__
21._RUQ_104
______AATT__________________
22._MXC_67
______AG____CG________ATAA__
23._RUQ_104
ATCCAAAACC__GGAAAAAAAAATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAGGTGGGTAGCCAA
1._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
2._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
3._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
4._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
5._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
6._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
7._GC-05-131-3-33
CGAACTGTAGCCACAGGTGGGTAGCCAA
8._GC-05-131-3-33
CGAACTGTAGCCACAGGTGGGTAGCCAA
9._GC-03-014-2-02
CGAACTGTAGCCACAGGTGGGTAGCCAA
10._MXC_67
CGAA______CC__AGGT____AG____
11._MXC_67
CGAA______CC__AGGT____AG____
12._MXC_67
CGAA______CC__AGGT____AG____
13._MXC_67
CGAA______CC__AGGT____AG____
14._MXC_67
CGAA______CC__AGGT____AG____
15._MXC_67
CGAA______CC__AGGT____AG____
16._MXC_67
CGAA______CC__AGGT____AG____
17._MXC_67
CGAA______CC__AGGT____AG____
18._MXC_67
CGAA______CC__AGGT____AG____
19._MXC_67
CGAA______CC__AGGT____AG____
20._RUQ_104
CGAA______CC__AGGT____AG____
21._RUQ_104
CG________CC__AG________CC__
22._MXC_67
CGAT______CC__AAGT____AA____
23._RUQ_104
CGAAAGACAGCCACAGACCCACAGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCGGAAGGTTCCGGGGGGTTCC
1._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
2._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
3._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
4._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
5._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
6._GC-03-014-2-02
CCTTAACCGGAAGGTTCCGGGGGGTTCC
7._GC-05-131-3-33
CCTTAACCGGAAGGTTCCGGGGGGTTCC
8._GC-05-131-3-33
CCTTAACC__AAGGTTCCGGGGGGTTCC
9._GC-03-014-2-02
CC__AACCGGAAGGTTCCGGGGGGTTCC
10._MXC_67
______CC__________________CC
11._MXC_67
______CC__________________CC
12._MXC_67
______CC__________________CC
13._MXC_67
______CC__________________CC
14._MXC_67
______CC__________________CC
15._MXC_67
______CC__________________CC
16._MXC_67
______CC__________________CC
17._MXC_67
______CC__________________CC
18._MXC_67
______CC__________________CC
19._MXC_67
______CC__________________CC
20._RUQ_104
______CC__________________CC
21._RUQ_104
__________AA________________
22._MXC_67
______CT__________________CT
23._RUQ_104
GGAA__GG__AAAGAA__GGGGCCAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
1._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
2._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
3._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
4._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
5._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
6._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
7._GC-05-131-3-33
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
8._GC-05-131-3-33
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
9._GC-03-014-2-02
CCTTAAGGCCCCCCGGAGAAGGGGTTAA
10._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
11._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
12._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
13._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
14._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
15._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
16._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
17._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
18._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
19._MXC_67
CC____GG__CCCCGG__AAGGGGTT__
20._RUQ_104
CC____GG__CCCCGG__AAGGGGTT__
21._RUQ_104
____AA____________AAGG__TTAA
22._MXC_67
CT________CTACCG__AAAGGTGG__
23._RUQ_104
GGAAAACCGGGGCCGGAGAAGGCCAAAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCTTAAAGACAAGGCCCGCTATACTT
1._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
2._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
3._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
4._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
5._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
6._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
7._GC-05-131-3-33
CCCC__AAAGACAAGGCCCGCTATACTT
8._GC-05-131-3-33
CCCCTTAAAGACAAGGCCCGCTATACTT
9._GC-03-014-2-02
CCCCTTAAAGACAAGGCCCGCTATACTT
10._MXC_67
____TT__________CCCG______TT
11._MXC_67
____TT__________CCCG______TT
12._MXC_67
____TT__________CCCG______TT
13._MXC_67
____TT__________CCCG______TT
14._MXC_67
____TT__________CCCG______TT
15._MXC_67
____TT__________CCCG______TT
16._MXC_67
____TT__________CCCG______TT
17._MXC_67
____TT__________CCCG______TT
18._MXC_67
____TT__________CCCG______TT
19._MXC_67
________________CCCG______TT
20._RUQ_104
____TT__________CCCG______CT
21._RUQ_104
________________CCCG____AC__
22._MXC_67
____CT__________ACCG______TT
23._RUQ_104
____AAAAAGACAA__CCCCAGATACAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
1._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
2._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
3._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
4._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
5._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
6._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
7._GC-05-131-3-33
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
8._GC-05-131-3-33
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
9._GC-03-014-2-02
TTCTTTGGCCCCGGTTATGGX_XX_XX_XX_X
10._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
11._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
12._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
13._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
14._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
15._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
16._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
17._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
18._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
19._MXC_67
TTCT__GG__CCGGTT____X_XX_XX_XX_X
20._RUQ_104
TTCT__GG__CCGGTT____X_XX_XX_XX_X
21._RUQ_104
__CT____CC__GG______X_XX_XX_XX_X
22._MXC_67
CTCT__GG__CTGTCT____X_XX_XX_XX_X
23._RUQ_104
AA__AA____GG__AAATGGX_XX_XX_XX_X

Input profile: MXC_67 GC-03-014-2-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

2._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

4._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

6._MXC_67 GC-03-014-2-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._MXC_67 GC-05-131-3-33

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._MXC_67 GC-05-131-3-33

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

9._MXC_67 GC-03-014-2-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 1
 Dapeng Zhang, 2016

11._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 2
 Dapeng Zhang, 2016

12._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 5
 Dapeng Zhang, 2016

13._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 9
 Dapeng Zhang, 2016

14._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 16
 Dapeng Zhang, 2016

15._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 12 > F
 Dapeng Zhang, 2016

16._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 4 > FP
 Dapeng Zhang, 2016

17._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 6 > FP
 Dapeng Zhang, 2016

18._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 5 > FP
 Dapeng Zhang, 2016

19._MXC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 4
 Dapeng Zhang, 2016

20._MXC_67 RUQ_104

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._MXC_67 RUQ_104

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._MXC_67

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 12 X3 Y4
 Dapeng Zhang, 2016

23._MXC_67 RUQ_104

54.4 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240