SNP Profiles of PA 195 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCCCCGGGGCTCCCCCCGGTTCCTT
1._EET_272_[ECU]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
2._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
3._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
4._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
9._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
10._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
11._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
12._EET_272_[ECU]___
____CTAA____TT__CT____TTTT__
13._EET_272_[ECU]___
AAAACTAA________CT__AG__CT__
14._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
15._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
16._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
17._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
18._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
19._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
20._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
21._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
22._EET_272_[ECU]___
____________TT______________
23._EET_272_[ECU]___
AAAC__CCGGGG__GGGG__GGAAGGAA
24._EET_272_[ECU]___
AAAA__AAGGGG__GGAG__GGAAAGAA
25._EET_272_[ECU]___
AAAA__AAGGGG__GGAG__GGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGCGCCCCTTAATTGGATAACCGG
1._EET_272_[ECU]___
AACCAGCGCCCCTTAATTGGATAACCGG
2._EET_272_[ECU]___
____AG____CC________ATAA__GG
3._EET_272_[ECU]___
____AG____CC________ATAA__GG
4._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
9._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
10._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
11._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
12._EET_272_[ECU]___
________CC________GG__AACCCC
13._EET_272_[ECU]___
__________GG________________
14._EET_272_[ECU]___
____GG____GG________TTAA__CC
15._EET_272_[ECU]___
____GG____GG________TTAA__CC
16._EET_272_[ECU]___
____GG____GG________TTAA__CC
17._EET_272_[ECU]___
____GG____GG________TTAA__CC
18._EET_272_[ECU]___
____GG____GG________TTAA__CC
19._EET_272_[ECU]___
____GG____GG________TTAA__CC
20._EET_272_[ECU]___
____GG____GG________TTAA__CC
21._EET_272_[ECU]___
____GG____GG________TTAA__CC
22._EET_272_[ECU]___
____GGTT__________________CC
23._EET_272_[ECU]___
TTCCAGCG__CCAAAGAAGGATAAGGCC
24._EET_272_[ECU]___
TTAAGGCC__GGAGAAAAGGTTAAGGGG
25._EET_272_[ECU]___
TTAAGGCC__GGAGAAAAGGTTAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAGGGGGTTGGCTAGCC
1._EET_272_[ECU]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
2._EET_272_[ECU]___
AA______CG__AGGG____GG______
3._EET_272_[ECU]___
AA______CG__AGGG____GG______
4._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
9._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
10._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
11._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
12._EET_272_[ECU]___
______GGGGCCAGGG____AACC____
13._EET_272_[ECU]___
AA__________AG______AA______
14._EET_272_[ECU]___
AA______GG__AGGG____AA______
15._EET_272_[ECU]___
AA______GG__AGGG____AA______
16._EET_272_[ECU]___
AA______GG__AGGG____AA______
17._EET_272_[ECU]___
AA______GG__AGGG____AA______
18._EET_272_[ECU]___
AA______GG__AGGG____AA______
19._EET_272_[ECU]___
AA______GG__AGGG____AA______
20._EET_272_[ECU]___
AA______GG__AGGG____AA______
21._EET_272_[ECU]___
AA______GG__AGGG____AA______
22._EET_272_[ECU]___
________GG__AG________CC____
23._EET_272_[ECU]___
AAAAACGGCGCCAGCCCCAAGGAGAGGG
24._EET_272_[ECU]___
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._EET_272_[ECU]___
AAAACCGGGGCCAGCCCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCCCT
1._EET_272_[ECU]___
GGTTCTAAGGAACC__GGAAGGTTCCCT
2._EET_272_[ECU]___
____CT__________________CCCT
3._EET_272_[ECU]___
____CT__________________CCCT
4._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
8._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
9._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
10._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
11._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGG__CTCC
12._EET_272_[ECU]___
GGTT____AG____________TTCT__
13._EET_272_[ECU]___
________________________CTCT
14._EET_272_[ECU]___
____TT__________________CTCC
15._EET_272_[ECU]___
____TT__________________CTCC
16._EET_272_[ECU]___
____TT__________________CTCC
17._EET_272_[ECU]___
____TT__________________CTCC
18._EET_272_[ECU]___
____TT__________________CTCC
19._EET_272_[ECU]___
____TT__________________CTCC
20._EET_272_[ECU]___
____TT__________________CTCC
21._EET_272_[ECU]___
____TT__________________CTCC
22._EET_272_[ECU]___
________AG__________________
23._EET_272_[ECU]___
CC__AG__GGAAGG__GGAACCAAGGAG
24._EET_272_[ECU]___
CC__AA__AGAAGG__GGGGCCAAAGGG
25._EET_272_[ECU]___
CC__AA__AGAAGG__GGGGCCAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
1._EET_272_[ECU]___
TTGGCCCCCCGGGGCCAGGTGGAGTTCC
2._EET_272_[ECU]___
____CC__CCGG__CCAGGTGG______
3._EET_272_[ECU]___
____CC__CCGG__CCAGGTGG______
4._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
5._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
6._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
7._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
8._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
9._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
10._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
11._EET_272_[ECU]___
TTGGCCCCTTGGGGACAAGTGGGGTTCG
12._EET_272_[ECU]___
TT__CCCCTT__GGACAAGTGGGG____
13._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
14._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
15._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
16._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
17._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
18._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
19._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
20._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
21._EET_272_[ECU]___
____CC__TTGG__ACAAGTGG______
22._EET_272_[ECU]___
__GG__________ACAA__GGGG____
23._EET_272_[ECU]___
AAGGGGGGGGGGGGCCAGACCCAG____
24._EET_272_[ECU]___
AAGGGGGGAAGGGGACAAACCCGG____
25._EET_272_[ECU]___
AAGGGGGGAAGGGGACAAACCCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCTCCAGACCCAAACGGCCTTAATTCT
1._EET_272_[ECU]___
AGCTCCAGACCCAAACGGCCTTAATTCT
2._EET_272_[ECU]___
AGCT__________ACGG______TTCT
3._EET_272_[ECU]___
AGCT__________ACGG______TTCT
4._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
5._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
6._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
7._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
8._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
9._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
10._EET_272_[ECU]___
AACTACAACCCCAACCCCCCAAACCTCT
11._EET_272_[ECU]___
AACTAC__CCCCAACCCCCCAAACCTCT
12._EET_272_[ECU]___
______________CCCC____ACCT__
13._EET_272_[ECU]___
AACT____________________CTCT
14._EET_272_[ECU]___
AACT__________CCCC______CTCT
15._EET_272_[ECU]___
AACT__________CCCC______CTCT
16._EET_272_[ECU]___
AACT__________CCCC______CTCT
17._EET_272_[ECU]___
AACT__________CCCC______CTCT
18._EET_272_[ECU]___
AACT__________CCCC______CTCT
19._EET_272_[ECU]___
AACT__________CCCC______CTCT
20._EET_272_[ECU]___
AACT__________CCCC______CTCT
21._EET_272_[ECU]___
AACT__________CCCC______CTCT
22._EET_272_[ECU]___
AA____________ACCC____AC____
23._EET_272_[ECU]___
__AGCCAGACCC__ACCCGGTTAAAAAG
24._EET_272_[ECU]___
__AGACAACCCC__CCGGGGAAACAGAG
25._EET_272_[ECU]___
__AGACAACCCC__CCGGGGAAACAGAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._EET_272_[ECU]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._EET_272_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
3._EET_272_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
4._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
5._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
6._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
7._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
8._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
9._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
10._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
11._EET_272_[ECU]___
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
12._EET_272_[ECU]___
____AA__CTTT______X_XX_XX_XX_XX_X
13._EET_272_[ECU]___
CT__AA__CTTTTT____X_XX_XX_XX_XX_X
14._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
15._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
16._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
17._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
18._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
19._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
20._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
21._EET_272_[ECU]___
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
22._EET_272_[ECU]___
CC____CT__TT______X_XX_XX_XX_XX_X
23._EET_272_[ECU]___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X
24._EET_272_[ECU]___
__AA____AGAAAAATGGX_XX_XX_XX_XX_X
25._EET_272_[ECU]___
__AA____AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_272_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

3._EET_272_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

4._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

72.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._EET_272_[ECU] RUQ_6

67.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EET_272_[ECU]

65.5 %
29 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

14._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

16._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

17._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

18._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

19._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

20._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

21._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

22._EET_272_[ECU] RUQ_6

57.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.185 IMC
0.266 Nan
0.488

23._EET_272_[ECU] GC-03-32-3-11

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._EET_272_[ECU] RUQ_6

35.4 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._EET_272_[ECU] MITC-000381

35.4 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240