SNP Profiles of BE 8 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	TT	AC	GG	AG	CT	CT	CC	CC	GG	TT	CC	TT
1._LCT_EEN_46___	AA	AC	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
2._LCT_EEN_46___	TT	__	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC
3._LCT_EEN_46___	TT	__	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC
4._LCT_EEN_46___	TT	__	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC
5._LCT_EEN_46___	TT	__	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC
6._LCT_EEN_46___	TT	__	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC
7._LCT_EEN_46___	AA	AC	CC	CC	AG	AG	TT	TT	CC	TT	AA	CT	TT	CT
8._LCT_EEN_46___	AA	AC	CC	CC	AG	AG	TT	TT	CC	TT	AA	CT	TT	CT
9._LCT_EEN_46___	TT	CC	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
10._LCT_EEN_46___	TT	CC	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
11._LCT_EEN_46___	TT	__	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
12._LCT_EEN_46___	TT	__	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
13._LCT_EEN_46___	TT	__	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
14._LCT_EEN_46___	TT	__	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
15._LCT_EEN_46___	TT	__	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__
16._LCT_EEN_46___	AA	AC	CC	CC	__	__	__	__	CC	TT	AA	__	TT	__
17._LCT_EEN_46___	AA	AC	CC	CC	__	__	__	__	CC	TT	AA	__	TT	__
18._LCT_EEN_46___	AA	AA	__	AA	GG	GG	__	GG	GG	__	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AT
1._LCT_EEN_46___	__	AA	__	__	GG	__	__	__	__	TT	AA	__	GG	AT
2._LCT_EEN_46___	AT	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG	AA
3._LCT_EEN_46___	AT	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG	AA
4._LCT_EEN_46___	AT	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG	AA
5._LCT_EEN_46___	AT	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG	AA
6._LCT_EEN_46___	AT	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG	AA
7._LCT_EEN_46___	AT	GG	CC	CG	GG	CC	AA	CT	AG	AT	AT	CG	CC	AT
8._LCT_EEN_46___	AT	GG	CC	CG	GG	CC	AA	CT	AG	AT	AT	CG	CC	AT
9._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
10._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
11._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
12._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
13._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
14._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
15._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG	AA
16._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AT	AT	__	CC	AT
17._LCT_EEN_46___	__	GG	__	__	GG	__	__	__	__	AT	AT	__	CC	AT
18._LCT_EEN_46___	TT	AA	CC	__	GG	AA	GG	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GT	AG	CC	CC	AG	GT	GT	TT	AG	TT	AA	CC	GG
1._LCT_EEN_46___	__	__	__	CC	__	AG	GT	__	__	AG	__	__	__	__
2._LCT_EEN_46___	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC	GG
3._LCT_EEN_46___	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC	GG
4._LCT_EEN_46___	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC	GG
5._LCT_EEN_46___	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC	GG
6._LCT_EEN_46___	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC	GG
7._LCT_EEN_46___	TT	GT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
8._LCT_EEN_46___	TT	GT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
9._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
10._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
11._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
12._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
13._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
14._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
15._LCT_EEN_46___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
16._LCT_EEN_46___	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__	__
17._LCT_EEN_46___	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__	__
18._LCT_EEN_46___	AA	CC	GG	CC	CC	GG	AA	CC	AA	AA	AA	AA	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	AA	CC	AC	AG	AG	GG	TT	CT	CT	TT
1._LCT_EEN_46___	__	CC	__	__	__	__	__	__	__	__	__	CT	CT	__
2._LCT_EEN_46___	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT	TT
3._LCT_EEN_46___	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT	TT
4._LCT_EEN_46___	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT	TT
5._LCT_EEN_46___	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT	TT
6._LCT_EEN_46___	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT	TT
7._LCT_EEN_46___	TT	CT	AG	GG	AG	CC	AC	GG	AG	GT	TT	TT	CC	TT
8._LCT_EEN_46___	TT	CT	AG	GG	AG	CC	AC	GG	AG	GT	__	TT	CC	TT
9._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
10._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
11._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
12._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
13._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
14._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
15._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	CC	TT	__
16._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	TT	CC	__
17._LCT_EEN_46___	__	CT	__	__	__	__	__	__	__	__	__	TT	CC	__
18._LCT_EEN_46___	__	GG	__	GG	AA	GG	__	GG	GG	AA	AA	GG	AA	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CT	CC	AC	GG	GG	AA	AA	GT	GG	AG	TT	CC
1._LCT_EEN_46___	__	CC	__	CC	AC	GG	__	AA	AA	GT	GG	__	__	__
2._LCT_EEN_46___	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT	CC
3._LCT_EEN_46___	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT	CC
4._LCT_EEN_46___	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT	CC
5._LCT_EEN_46___	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT	CC
6._LCT_EEN_46___	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT	CC
7._LCT_EEN_46___	GG	CC	CC	TT	CC	GG	GG	__	AG	GG	GT	AG	CT	CC
8._LCT_EEN_46___	GG	CC	CC	TT	CC	GG	GG	AC	AG	GG	GT	AG	CT	CC
9._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
10._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
11._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
12._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
13._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
14._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
15._LCT_EEN_46___	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__	__
16._LCT_EEN_46___	__	CC	__	TT	CC	GG	__	__	AG	GG	GT	__	__	__
17._LCT_EEN_46___	__	CC	__	TT	CC	GG	__	AC	AG	GG	GT	__	__	__
18._LCT_EEN_46___	AA	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AG	CT	CC	AA	CC	AA	AA	CC	GG	CC	AT	AC	TT	TT
1._LCT_EEN_46___	AG	CT	__	__	__	__	__	CC	GG	__	__	__	TT	TT
2._LCT_EEN_46___	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT	TT
3._LCT_EEN_46___	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT	TT
4._LCT_EEN_46___	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT	TT
5._LCT_EEN_46___	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT	TT
6._LCT_EEN_46___	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT	TT
7._LCT_EEN_46___	AA	CT	AC	AG	AC	CC	AA	AA	CC	CC	AA	AC	TT	CT
8._LCT_EEN_46___	AA	CT	AC	AG	AC	CC	AA	AA	CC	CC	AA	AC	TT	CT
9._LCT_EEN_46___	AG	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
10._LCT_EEN_46___	AG	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
11._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
12._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
13._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
14._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
15._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT	TT
16._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT	CT
17._LCT_EEN_46___	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT	CT
18._LCT_EEN_46___	__	AA	CC	AA	CC	AA	__	CC	CC	GG	TT	AA	AA	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CT	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._LCT_EEN_46___	CT	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
2._LCT_EEN_46___	CC	TT	AG	TT	CC	__	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
3._LCT_EEN_46___	CC	__	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
4._LCT_EEN_46___	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_46___	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_46___	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_46___	CC	CC	AG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_46___	CC	CC	AG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
9._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
10._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
11._LCT_EEN_46___	CC	__	AG	__	CC	__	CC	__	__	X_X	X_X	X_X	X_X	X_X
12._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
13._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
14._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
15._LCT_EEN_46___	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X	X_X
16._LCT_EEN_46___	CC	__	AG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
17._LCT_EEN_46___	CC	__	AG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
18._LCT_EEN_46___	__	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_46 GC-03-033-3-12

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

1._LCT_EEN_46

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 6

Dapeng Zhang, 2016

2._LCT_EEN_46 GC-03-033-3-12

62.6 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._LCT_EEN_46 GC-03-033-3-12

62.6 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

5._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

7._LCT_EEN_46 GC-03-033-3-12

60.9 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

8._LCT_EEN_46 GC-03-033-3-12

60.3 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

9._LCT_EEN_46

58.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 478

Dapeng Zhang, 2016

10._LCT_EEN_46

58.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 17 T1

Dapeng Zhang, 2016

11._LCT_EEN_46

57.9 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 2

Dapeng Zhang, 2016

12._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 7

Dapeng Zhang, 2016

13._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 9

Dapeng Zhang, 2016

14._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 10

Dapeng Zhang, 2016

15._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 1 > FP

Dapeng Zhang, 2016

16._LCT_EEN_46

50 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 4 > FP

Dapeng Zhang, 2016

17._LCT_EEN_46

50 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 5 > FP

Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

36.7 %
79 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240