SNP Profiles of LCT EEN 46 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC	AT
1._LCT_EEN_46___	TT	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC	AT
2._LCT_EEN_46___	TT	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC	AT
3._LCT_EEN_46___	TT	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC	AT
4._LCT_EEN_46___	TT	CT	CC	AA	AG	TT	CT	CT	CT	AG	TT	CT	CC	AT
5._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
6._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
7._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
8._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
9._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
10._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
11._LCT_EEN_46___	TT	CT	CC	__	__	__	__	CT	CT	AG	__	CT	__	__
12._LCT_EEN_46___	AA	CC	CC	AG	AG	TT	TT	CC	TT	AA	CT	TT	CT	AT
13._LCT_EEN_46___	AA	CC	CC	AG	AG	TT	TT	CC	TT	AA	CT	TT	CT	AT
14._LCT_EEN_46___	AA	CC	CC	__	__	__	__	CC	TT	AA	__	TT	__	__
15._LCT_EEN_46___	AA	TT	AC	GG	AG	CT	CT	CC	CC	GG	TT	CC	TT	AA
16._LCT_EEN_46___	AA	CC	CC	__	__	__	__	CC	TT	AA	__	TT	__	__
17._LCT_EEN_46___	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__	__
18._LCT_EEN_46___	AA	__	AA	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG
1._LCT_EEN_46___	AC	AA	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG
2._LCT_EEN_46___	AC	AA	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG
3._LCT_EEN_46___	AC	AA	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG
4._LCT_EEN_46___	AC	AA	GG	GG	GG	GG	TT	AA	CT	GG	AA	AT	CG	GG
5._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
6._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
7._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
8._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
9._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
10._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
11._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AA	AT	__	GG
12._LCT_EEN_46___	AA	AA	GG	CC	CG	GG	CC	AA	CT	AG	AT	AT	CG	CC
13._LCT_EEN_46___	AA	AA	GG	CC	CG	GG	CC	AA	CT	AG	AT	AT	CG	CC
14._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AT	AT	__	CC
15._LCT_EEN_46___	__	__	AA	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG
16._LCT_EEN_46___	__	__	GG	__	__	GG	__	__	__	__	AT	AT	__	CC
17._LCT_EEN_46___	__	__	AA	__	__	GG	__	__	__	__	TT	AA	__	GG
18._LCT_EEN_46___	CC	GG	AA	CC	__	GG	AA	GG	AA	GG	TT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC
1._LCT_EEN_46___	AA	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC
2._LCT_EEN_46___	AA	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC
3._LCT_EEN_46___	AA	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC
4._LCT_EEN_46___	AA	TT	TT	AG	CC	CC	AA	TT	GG	TT	AG	TT	GG	CC
5._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
6._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
7._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
8._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
9._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
10._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
11._LCT_EEN_46___	AA	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__
12._LCT_EEN_46___	AT	TT	GT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
13._LCT_EEN_46___	AT	TT	GT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
14._LCT_EEN_46___	AT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
15._LCT_EEN_46___	AT	TT	GT	AG	CC	CC	AG	GT	GT	TT	AG	TT	AA	CC
16._LCT_EEN_46___	AT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
17._LCT_EEN_46___	AT	__	__	__	CC	__	AG	GT	__	__	AG	__	__	__
18._LCT_EEN_46___	AA	AA	CC	GG	CC	CC	GG	AA	CC	AA	AA	AA	AA	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT
1._LCT_EEN_46___	GG	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT
2._LCT_EEN_46___	GG	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT
3._LCT_EEN_46___	GG	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT
4._LCT_EEN_46___	GG	TT	CT	AA	GG	AA	CT	AC	GG	GG	TT	TT	CC	TT
5._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
6._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
7._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
8._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
9._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
10._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
11._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	TT
12._LCT_EEN_46___	GG	TT	CT	AG	GG	AG	CC	AC	GG	AG	GT	__	TT	CC
13._LCT_EEN_46___	GG	TT	CT	AG	GG	AG	CC	AC	GG	AG	GT	TT	TT	CC
14._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	TT	CC
15._LCT_EEN_46___	GG	TT	CC	AA	GG	AA	CC	AC	AG	AG	GG	TT	CT	CT
16._LCT_EEN_46___	__	__	CT	__	__	__	__	__	__	__	__	__	TT	CC
17._LCT_EEN_46___	__	__	CC	__	__	__	__	__	__	__	__	__	CT	CT
18._LCT_EEN_46___	CC	__	GG	__	GG	AA	GG	__	GG	GG	AA	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT
1._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT
2._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT
3._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT
4._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	CC	AA	AC	AA	GT	GG	AG	TT
5._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
6._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
7._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
8._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
9._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
10._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
11._LCT_EEN_46___	__	__	CC	__	TT	CC	CC	__	AC	AA	GT	GG	__	__
12._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	GG	GG	AC	AG	GG	GT	AG	CT
13._LCT_EEN_46___	TT	GG	CC	CC	TT	CC	GG	GG	__	AG	GG	GT	AG	CT
14._LCT_EEN_46___	__	__	CC	__	TT	CC	GG	__	AC	AG	GG	GT	__	__
15._LCT_EEN_46___	TT	AG	CC	CT	CC	AC	GG	GG	AA	AA	GT	GG	AG	TT
16._LCT_EEN_46___	__	__	CC	__	TT	CC	GG	__	__	AG	GG	GT	__	__
17._LCT_EEN_46___	__	__	CC	__	CC	AC	GG	__	AA	AA	GT	GG	__	__
18._LCT_EEN_46___	AA	AA	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT
1._LCT_EEN_46___	CC	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT
2._LCT_EEN_46___	CC	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT
3._LCT_EEN_46___	CC	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT
4._LCT_EEN_46___	CC	AA	CT	AC	GG	AA	AC	AA	AA	CG	CC	AA	CC	TT
5._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
6._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
7._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
8._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
9._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CG	__	__	__	TT
10._LCT_EEN_46___	__	AG	CT	__	__	__	__	__	AA	CG	__	__	__	TT
11._LCT_EEN_46___	__	AG	CT	__	__	__	__	__	AA	CG	__	__	__	TT
12._LCT_EEN_46___	CC	AA	CT	AC	AG	AC	CC	AA	AA	CC	CC	AA	AC	TT
13._LCT_EEN_46___	CC	AA	CT	AC	AG	AC	CC	AA	AA	CC	CC	AA	AC	TT
14._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
15._LCT_EEN_46___	CC	AG	CT	CC	AA	CC	AA	AA	CC	GG	CC	AT	AC	TT
16._LCT_EEN_46___	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
17._LCT_EEN_46___	__	AG	CT	__	__	__	__	__	CC	GG	__	__	__	TT
18._LCT_EEN_46___	__	__	AA	CC	AA	CC	AA	__	CC	CC	GG	TT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X
1._LCT_EEN_46___	TT	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X
2._LCT_EEN_46___	TT	CC	TT	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X
3._LCT_EEN_46___	TT	CC	TT	AG	TT	CC	__	CC	AA	GG	X_X	X_X	X_X	X_X
4._LCT_EEN_46___	TT	CC	__	AG	TT	CC	GT	CC	AA	GG	X_X	X_X	X_X	X_X
5._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
6._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
7._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
8._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
9._LCT_EEN_46___	TT	CC	__	AG	__	CC	__	CC	__	__	X_X	X_X	X_X	X_X
10._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
11._LCT_EEN_46___	TT	CC	__	AG	__	CC	GT	CC	__	__	X_X	X_X	X_X	X_X
12._LCT_EEN_46___	CT	CC	CC	AG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X
13._LCT_EEN_46___	CT	CC	CC	AG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X
14._LCT_EEN_46___	CT	CC	__	AG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X
15._LCT_EEN_46___	TT	CT	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
16._LCT_EEN_46___	CT	CC	__	AG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X
17._LCT_EEN_46___	TT	CT	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
18._LCT_EEN_46___	AA	__	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_46 GC-03-033-3-12

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

1._LCT_EEN_46 GC-03-033-3-12

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._LCT_EEN_46 GC-03-033-3-12

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._LCT_EEN_46 GC-03-033-3-12

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 7

Dapeng Zhang, 2016

6._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 9

Dapeng Zhang, 2016

7._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 10

Dapeng Zhang, 2016

8._LCT_EEN_46

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 1 > FP

Dapeng Zhang, 2016

9._LCT_EEN_46

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 2

Dapeng Zhang, 2016

10._LCT_EEN_46

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 478

Dapeng Zhang, 2016

11._LCT_EEN_46

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 17 T1

Dapeng Zhang, 2016

12._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

13._LCT_EEN_46 GC-03-033-3-12

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

14._LCT_EEN_46

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 5 > FP

Dapeng Zhang, 2016

15._LCT_EEN_46 GC-03-033-3-12

62.5 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

16._LCT_EEN_46

61.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 4 > FP

Dapeng Zhang, 2016

17._LCT_EEN_46

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 6

Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

21.9 %
80 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240