SNP Profiles of LV 20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	AA	TT	CC	AG	AG	CT	CT	CC	CC	GG	TT	CT	CC
1._GC-04-027-2-09	AT	AA	TT	CC	AG	AG	CT	CT	CC	CC	GG	TT	CT	CC
2._GC-04-027-2-09	AT	AA	TT	CC	AG	AG	CT	CT	CC	CC	GG	TT	CT	CC
3._GC-04-027-2-09	AT	AA	TT	CC	AG	AG	CT	CT	CC	CC	GG	TT	CT	CC
4._LV_20_[POU]	AT	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
5._LV_20_[POU]	AT	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
6._LV_20_[POU]	AT	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
7._LV_20_[POU]	AT	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
8._RUQ_354	__	__	TT	CC	__	__	CC	__	CC	__	__	TT	TT	__
9._RUQ_354	AT	AC	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
10._LV_20_[POU]	AT	AC	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
11._LV_20_[POU]	AT	AC	TT	CC	__	__	__	__	CC	CC	GG	__	CT	__
12._RUQ_354	__	__	__	CC	__	__	CC	__	__	__	__	__	__	__
13._RUQ_354	AT	AC	__	CC	AG	AG	__	AG	GG	__	GG	AA	AG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	AG	GG	CG	GG	TT	AA	TT	GG	TT	AA	CC
1._GC-04-027-2-09	AA	CC	AA	AG	GG	CG	GG	TT	AA	TT	GG	TT	AA	CC
2._GC-04-027-2-09	AA	CC	AA	AG	GG	CG	GG	TT	AA	TT	GG	TT	AA	CC
3._GC-04-027-2-09	AA	CC	AA	AG	GG	CG	GG	TT	AA	TT	GG	TT	AA	CC
4._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
5._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
6._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
7._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
8._RUQ_354	__	__	__	__	__	CG	__	__	__	__	GG	__	AA	CC
9._RUQ_354	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
10._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
11._LV_20_[POU]	__	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__
12._RUQ_354	__	__	__	AG	CT	__	__	__	__	__	__	__	__	__
13._RUQ_354	TT	CC	AA	AG	CC	__	GG	AA	AG	AA	GG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AT	TT	GG	AG	CG	CC	AG	GT	GG	TT	AG	CT	AA
1._GC-04-027-2-09	GG	AT	TT	GG	AG	CG	CC	AG	GT	GG	TT	AG	CT	AA
2._GC-04-027-2-09	GG	AT	TT	GG	AG	CG	CC	AG	GT	GG	TT	AG	CT	AA
3._GC-04-027-2-09	GG	AT	TT	GG	AG	CG	CC	AG	GT	GG	TT	AG	CT	AA
4._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
5._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
6._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
7._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
8._RUQ_354	GG	__	__	__	AG	CG	CC	AG	GT	__	__	AG	CT	__
9._RUQ_354	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
10._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
11._LV_20_[POU]	GG	AT	__	__	__	CG	__	AG	GT	__	__	AG	__	__
12._RUQ_354	GG	__	__	__	__	CG	__	AG	__	__	__	__	CT	__
13._RUQ_354	CC	AT	AA	CC	AG	CG	CC	AG	AC	CC	AA	AG	AG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	TT	TT	CT
1._GC-04-027-2-09	CG	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	TT	TT	CT
2._GC-04-027-2-09	CG	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	TT	TT	CT
3._GC-04-027-2-09	CG	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	TT	TT	CT
4._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
5._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
6._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
7._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
8._RUQ_354	__	GG	TT	__	__	GG	__	__	__	__	__	__	TT	CT
9._RUQ_354	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
10._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
11._LV_20_[POU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	CT
12._RUQ_354	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
13._RUQ_354	CG	CC	__	AG	__	GG	AA	GG	__	GG	GG	AA	AA	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	TT	AG	CC	CT	CT	AC	CG	AG	CC	AA	GT	GT	AG
1._GC-04-027-2-09	TT	TT	AG	CC	CT	CT	AC	CG	AG	CC	AA	GT	GT	AG
2._GC-04-027-2-09	TT	TT	AG	CC	CT	CT	AC	CG	AG	CC	AA	GT	GT	AG
3._GC-04-027-2-09	TT	TT	AG	CC	CT	CT	AC	CG	AG	CC	AA	GT	GT	AG
4._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
5._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
6._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
7._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
8._RUQ_354	__	TT	__	CC	CT	CT	AC	__	AG	CC	AA	GT	GT	AG
9._RUQ_354	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
10._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
11._LV_20_[POU]	TT	__	__	CC	__	CT	AC	CG	__	CC	AA	GT	GT	__
12._RUQ_354	__	__	AG	__	__	__	__	__	__	CC	AA	__	GT	AG
13._RUQ_354	AA	AA	AG	GG	AG	AG	AC	CG	AG	CC	AA	AC	AC	AG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	CC	AG	CT	AC	AG	CC	AC	AA	CC	CG	CC	AA	AC
1._GC-04-027-2-09	CC	CC	AG	CT	AC	AG	CC	AC	AA	CC	CG	CC	AA	AC
2._GC-04-027-2-09	CC	CC	AG	CT	AC	AG	CC	AC	AA	CC	CG	CC	AA	AC
3._GC-04-027-2-09	CC	CC	AG	CT	AC	AG	CC	AC	AA	CC	CG	CC	AA	AC
4._LV_20_[POU]	__	__	AG	CT	__	__	__	__	__	CC	CG	__	__	__
5._LV_20_[POU]	__	__	AG	CT	__	__	__	__	__	CC	CG	__	__	__
6._LV_20_[POU]	__	__	AG	CT	__	__	__	__	__	CC	CG	__	__	__
7._LV_20_[POU]	__	__	AG	CT	__	__	__	__	__	CC	CG	__	__	__
8._RUQ_354	__	__	__	__	__	__	__	__	__	CC	CG	__	__	AC
9._RUQ_354	__	__	GG	CT	__	__	__	__	__	CC	CG	__	__	__
10._LV_20_[POU]	__	__	GG	CT	__	__	__	__	__	CC	CG	__	__	__
11._LV_20_[POU]	__	__	GG	CT	__	__	__	__	__	CC	CG	__	__	__
12._RUQ_354	__	__	GG	__	__	__	__	__	__	CC	CG	__	__	AC
13._RUQ_354	__	__	__	AG	AC	AG	CC	AC	__	CC	CG	GG	AA	AC

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	TT	TT	CT	TT	AG	TT	CC	GT	CT	AA	GG	X_X	X_X	X_X
1._GC-04-027-2-09	TT	TT	CT	TT	AG	TT	CC	GT	CT	AA	GG	X_X	X_X	X_X
2._GC-04-027-2-09	TT	TT	CT	TT	AG	TT	CC	GT	CT	AA	GG	X_X	X_X	X_X
3._GC-04-027-2-09	TT	TT	CT	TT	AG	TT	CC	GT	CT	AA	GG	X_X	X_X	X_X
4._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
5._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
6._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
7._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
8._RUQ_354	TT	__	__	__	AG	TT	CC	GT	__	__	__	X_X	X_X	X_X
9._RUQ_354	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
10._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
11._LV_20_[POU]	TT	TT	CT	__	AG	__	CC	GT	CT	__	__	X_X	X_X	X_X
12._RUQ_354	__	__	CT	__	__	TT	__	GT	__	__	__	X_X	X_X	X_X
13._RUQ_354	AA	AA	__	AA	__	__	GG	AC	AG	TT	GG	X_X	X_X	X_X

Input profile: LV_20_[POU] GC-04-027-2-09

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

1._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

2._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

3._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

4._LV_20_[POU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

5._LV_20_[POU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

7._LV_20_[POU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

8._LV_20_[POU] RUQ_354

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._LV_20_[POU] RUQ_354

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._LV_20_[POU]

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

11._LV_20_[POU]

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

12._LV_20_[POU] RUQ_354

90.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

13._LV_20_[POU] RUQ_354

50.6 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240