SNP Profiles of LV 20 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAATTCCAGAGCTCTCCCCGGTTCTCC
1._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
2._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
3._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
4._LV_20_[POU]
ATAATTCC________CCCCGG__CT__
5._LV_20_[POU]
ATAATTCC________CCCCGG__CT__
6._LV_20_[POU]
ATAATTCC________CCCCGG__CT__
7._LV_20_[POU]
ATAATTCC________CCCCGG__CT__
8._RUQ_354
____TTCC____CC__CC____TTTT__
9._RUQ_354
ATACTTCC________CCCCGG__CT__
10._LV_20_[POU]
ATACTTCC________CCCCGG__CT__
11._LV_20_[POU]
ATACTTCC________CCCCGG__CT__
12._RUQ_354
______CC____CC______________
13._RUQ_354
ATAC__CCAGAG__AGGG__GGAAAGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAGGGCGGGTTAATTGGTTAACC
1._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
2._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
3._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
4._LV_20_[POU]
______AG____GG________TTAA__
5._LV_20_[POU]
______AG____GG________TTAA__
6._LV_20_[POU]
______AG____GG________TTAA__
7._LV_20_[POU]
______AG____GG________TTAA__
8._RUQ_354
__________CG________GG__AACC
9._RUQ_354
______AG____GG________TTAA__
10._LV_20_[POU]
______AG____GG________TTAA__
11._LV_20_[POU]
______AG____GG________TTAA__
12._RUQ_354
______AGCT__________________
13._RUQ_354
TTCCAAAGCC__GGAAAGAAGGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATTTGGAGCGCCAGGTGGTTAGCTAA
1._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
2._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
3._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
4._LV_20_[POU]
GGAT______CG__AGGT____AG____
5._LV_20_[POU]
GGAT______CG__AGGT____AG____
6._LV_20_[POU]
GGAT______CG__AGGT____AG____
7._LV_20_[POU]
GGAT______CG__AGGT____AG____
8._RUQ_354
GG______AGCGCCAGGT____AGCT__
9._RUQ_354
GGAT______CG__AGGT____AG____
10._LV_20_[POU]
GGAT______CG__AGGT____AG____
11._LV_20_[POU]
GGAT______CG__AGGT____AG____
12._RUQ_354
GG________CG__AG________CT__
13._RUQ_354
CCATAACCAGCGCCAGACCCAAAGAGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGGTTCTAAGGAACCACGGGGTTTTCT
1._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
2._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
3._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
4._LV_20_[POU]
______CT__________________CT
5._LV_20_[POU]
______CT__________________CT
6._LV_20_[POU]
______CT__________________CT
7._LV_20_[POU]
______CT__________________CT
8._RUQ_354
__GGTT____GG____________TTCT
9._RUQ_354
______CT__________________CT
10._LV_20_[POU]
______CT__________________CT
11._LV_20_[POU]
______CT__________________CT
12._RUQ_354
__________GG________________
13._RUQ_354
CGCC__AG__GGAAGG__GGGGAAAAAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTTTAGCCCTCTACCGAGCCAAGTGTAG
1._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
2._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
3._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
4._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
5._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
6._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
7._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
8._RUQ_354
__TT__CCCTCTAC__AGCCAAGTGTAG
9._RUQ_354
TT____CC__CTACCG__CCAAGTGT__
10._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
11._LV_20_[POU]
TT____CC__CTACCG__CCAAGTGT__
12._RUQ_354
____AG____________CCAA__GTAG
13._RUQ_354
AAAAAGGGAGAGACCGAGCCAAACACAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCAGCTACAGCCACAACCCGCCAAAC
1._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
2._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
3._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
4._LV_20_[POU]
____AGCT__________CCCG______
5._LV_20_[POU]
____AGCT__________CCCG______
6._LV_20_[POU]
____AGCT__________CCCG______
7._LV_20_[POU]
____AGCT__________CCCG______
8._RUQ_354
__________________CCCG____AC
9._RUQ_354
____GGCT__________CCCG______
10._LV_20_[POU]
____GGCT__________CCCG______
11._LV_20_[POU]
____GGCT__________CCCG______
12._RUQ_354
____GG____________CCCG____AC
13._RUQ_354
______AGACAGCCAC__CCCGGGAAAC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
1._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
2._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
3._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
4._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
5._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
6._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
7._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
8._RUQ_354
TT______AGTTCCGT______X_XX_XX_X
9._RUQ_354
TTTTCT__AG__CCGTCT____X_XX_XX_X
10._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
11._LV_20_[POU]
TTTTCT__AG__CCGTCT____X_XX_XX_X
12._RUQ_354
____CT____TT__GT______X_XX_XX_X
13._RUQ_354
AAAA__AA____GGACAGTTGGX_XX_XX_X

Input profile: LV_20_[POU] GC-04-027-2-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

1._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

5._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

6._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

7._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016

8._LV_20_[POU] RUQ_354

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._LV_20_[POU] RUQ_354

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._LV_20_[POU]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

11._LV_20_[POU]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

12._LV_20_[POU] RUQ_354

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._LV_20_[POU] RUQ_354

50.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240