SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCGGTTTTTTAA
1._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
2._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
3._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
4._IMC_2___
AACCCCAC________CCGG__TT____
5._IMC_2___
AACCCCAC________CCGG__TT____
6._IMC_2___
AACCCCAC________CCGG__TT____
7._IMC_2___
AACCCCAC________CCGG__TT____
8._IMC_2___
AACCCCAC________CCAG__CT____
9._IMC_2___
____CCAC____TT__CC__TTTT____
10._IMC_2___
AACCCTAA________CCGG__TT____
11._IMC_2___
AACC__ACGGGG__GGGGGGAAAAAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCCAATTGGTTATCCCC
1._IMC_2___
AAAAGGCGCCGGCCAATTGGTTATCCCC
2._IMC_2___
AAAA__CGCCGGCCAATTGGTTATCCCC
3._IMC_2___
AAAAGGCGCCGGCCAATTGGTTATCCCC
4._IMC_2___
____GG____GG________TTAT__CC
5._IMC_2___
____GG____GG________TTAT__CC
6._IMC_2___
____GG____GG________TTAT__CC
7._IMC_2___
__________GG________TTAT__CC
8._IMC_2___
____GG____GG________TTAT__CC
9._IMC_2___
________CC________GG__ATCCCC
10._IMC_2___
____GG______________TTAA__CC
11._IMC_2___
AAAGGGCG__GGGGAAAAGGTTATGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGGGGGGCCAATTGGTTAGCTGGCC
1._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
2._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
3._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
4._IMC_2___
AT______GG__AATT____AG______
5._IMC_2___
AT______GG__AATT____AG______
6._IMC_2___
AT______GG__AATT____AG______
7._IMC_2___
AT______GG__AATT____AG______
8._IMC_2___
AT______GG__AATT____AG______
9._IMC_2___
______GGCGCCAATT____AGCT____
10._IMC_2___
AA______GG__AAGT____AG______
11._IMC_2___
ATAACCGGCGCCAAAACCAAAGAGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAGGTTTCTCC
1._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
2._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
3._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
4._IMC_2___
____TT__________________CTCC
5._IMC_2___
____TT__________________CTCC
6._IMC_2___
____TT__________________CTCC
7._IMC_2___
____TT__________________CTCC
8._IMC_2___
____TT__________________CTCC
9._IMC_2___
GGTT____AG____________CTCT__
10._IMC_2___
____TT__________________CT__
11._IMC_2___
CC__AA__AGAAGG__GGAGACAGAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTACCGGGCCAGGTGTGGTT
1._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
2._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
3._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
4._IMC_2___
____CC__TTACCG__CCAGGTGT____
5._IMC_2___
____CC__TTACCG__CCAGGTGT____
6._IMC_2___
____CC__TTACCG__CCAGGTGT____
7._IMC_2___
____CC__TTACCG__CCAGGTGT____
8._IMC_2___
____CC__TTACCG__CCAGGTGT____
9._IMC_2___
TT__CCCCTTAC__GGCCAGGTGTGG__
10._IMC_2___
________TTACGG__AC__GGGG____
11._IMC_2___
AAGGGGGGAAACCGGGCCAGACACGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACCACAGACACAAACGGCCATACCC
1._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
2._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
3._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
4._IMC_2___
__AACC__________ACGG______CC
5._IMC_2___
__AACC__________ACGG______CC
6._IMC_2___
__AACC__________ACGG______CC
7._IMC_2___
__AACC__________ACGG______CC
8._IMC_2___
__AACC__________ACGG______CC
9._IMC_2___
________________ACGG____ACCC
10._IMC_2___
__AACC__________CCCG______CC
11._IMC_2___
____GGACAGACAC__ACCCGGATACGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
1._IMC_2___
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
2._IMC_2___
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
3._IMC_2___
TTCCCCAGCCCTTTCTTT__X_XX_XX_XX_X
4._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
5._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
6._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
7._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
8._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
9._IMC_2___
______AGCCCTTT______X_XX_XX_XX_X
10._IMC_2___
TT____AA__CTGG______X_XX_XX_XX_X
11._IMC_2___
AA__GG____AGAAAGAAGGX_XX_XX_XX_X

Input profile: IMC_2 GC-04-042-3-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._IMC_2 GC-04-042-3-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._IMC_2 GC-04-042-3-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_2 GC-04-042-3-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

5._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

6._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

7._IMC_2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

8._IMC_2 RUQ_828

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._IMC_2 RUQ_828

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_2

78.8 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

49.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240