SNP Profiles of POUND 18 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
1._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
2._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
3._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	__	GG	TT	TT	TT
4._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
5._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
6._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	__	GG	__	TT	__
7._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
8._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	AG	__	CT	__
9._IMC_2___	__	__	CC	AC	__	__	TT	__	CC	__	__	TT	TT	__
10._IMC_2___	AA	CC	CT	AA	__	__	__	__	CC	CC	GG	__	TT	__
11._IMC_2___	AA	CC	__	AC	GG	GG	__	GG	GG	__	GG	AA	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	GG	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC
1._IMC_2___	AA	AA	AA	GG	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC
2._IMC_2___	AA	AA	AA	__	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC
3._IMC_2___	AA	AA	AA	GG	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC
4._IMC_2___	__	__	__	GG	__	__	GG	__	__	__	__	TT	AT	__
5._IMC_2___	__	__	__	GG	__	__	GG	__	__	__	__	TT	AT	__
6._IMC_2___	__	__	__	GG	__	__	GG	__	__	__	__	TT	AT	__
7._IMC_2___	__	__	__	__	__	__	GG	__	__	__	__	TT	AT	__
8._IMC_2___	__	__	__	GG	__	__	GG	__	__	__	__	TT	AT	__
9._IMC_2___	__	__	__	__	__	CC	__	__	__	__	GG	__	AT	CC
10._IMC_2___	__	__	__	GG	__	__	__	__	__	__	__	TT	AA	__
11._IMC_2___	TT	AA	AG	GG	CG	__	GG	GG	AA	AA	GG	TT	AT	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG
1._IMC_2___	CC	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG
2._IMC_2___	CC	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG
3._IMC_2___	CC	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG
4._IMC_2___	CC	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__
5._IMC_2___	CC	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__
6._IMC_2___	CC	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__
7._IMC_2___	CC	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__
8._IMC_2___	CC	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__
9._IMC_2___	CC	__	__	__	GG	CG	CC	AA	TT	__	__	AG	CT	__
10._IMC_2___	CC	AA	__	__	__	GG	__	AA	GT	__	__	AG	__	__
11._IMC_2___	GG	AT	AA	CC	GG	CG	CC	AA	AA	CC	AA	AG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT
1._IMC_2___	CC	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT
2._IMC_2___	CC	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT
3._IMC_2___	CC	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT
4._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
5._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
6._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
7._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
8._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
9._IMC_2___	__	GG	TT	__	__	AG	__	__	__	__	__	__	CT	CT
10._IMC_2___	__	__	__	TT	__	__	__	__	__	__	__	__	__	CT
11._IMC_2___	GG	CC	__	AA	__	AG	AA	GG	__	GG	AG	AC	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG
1._IMC_2___	CC	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG
2._IMC_2___	CC	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG
3._IMC_2___	CC	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG
4._IMC_2___	CC	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__
5._IMC_2___	CC	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__
6._IMC_2___	CC	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__
7._IMC_2___	CC	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__
8._IMC_2___	CC	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__
9._IMC_2___	__	TT	__	CC	CC	TT	AC	__	GG	CC	AG	GT	GT	GG
10._IMC_2___	__	__	__	__	__	TT	AC	GG	__	AC	__	GG	GG	__
11._IMC_2___	GG	AA	GG	GG	GG	AA	AC	CG	GG	CC	AG	AC	AC	GG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC
1._IMC_2___	TT	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC
2._IMC_2___	TT	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC
3._IMC_2___	TT	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC
4._IMC_2___	__	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__
5._IMC_2___	__	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__
6._IMC_2___	__	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__
7._IMC_2___	__	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__
8._IMC_2___	__	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__
9._IMC_2___	__	__	__	__	__	__	__	__	__	AC	GG	__	__	AC
10._IMC_2___	__	__	AA	CC	__	__	__	__	__	CC	CG	__	__	__
11._IMC_2___	__	__	__	GG	AC	AG	AC	AC	__	AC	CC	GG	AT	AC

	85	86	87	88	89	90	91	92	93	94
_Input profile	CC	TT	CC	CC	AG	CC	CT	TT	CT	TT	X_X	X_X	X_X	X_X
1._IMC_2___	CC	TT	CC	CC	AG	CC	CT	TT	CT	TT	X_X	X_X	X_X	X_X
2._IMC_2___	CC	TT	CC	CC	AG	CC	CT	TT	CT	TT	X_X	X_X	X_X	X_X
3._IMC_2___	CC	TT	CC	CC	AG	CC	CT	TT	CT	TT	X_X	X_X	X_X	X_X
4._IMC_2___	CC	TT	CC	__	AG	__	CT	TT	CT	__	X_X	X_X	X_X	X_X
5._IMC_2___	CC	TT	CC	__	AG	__	CT	TT	CT	__	X_X	X_X	X_X	X_X
6._IMC_2___	CC	TT	CC	__	AG	__	CT	TT	CT	__	X_X	X_X	X_X	X_X
7._IMC_2___	CC	TT	CC	__	AG	__	CT	TT	CT	__	X_X	X_X	X_X	X_X
8._IMC_2___	CC	TT	CC	__	AG	__	CT	TT	CT	__	X_X	X_X	X_X	X_X
9._IMC_2___	CC	__	__	__	AG	CC	CT	TT	__	__	X_X	X_X	X_X	X_X
10._IMC_2___	CC	TT	__	__	AA	__	CT	GG	__	__	X_X	X_X	X_X	X_X
11._IMC_2___	GG	AA	__	GG	__	__	AG	AA	AG	AA	X_X	X_X	X_X	X_X

Input profile: IMC_2 GC-04-042-3-06

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

1._IMC_2 GC-04-042-3-06

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._IMC_2 GC-04-042-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._IMC_2 GC-04-042-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

4._IMC_2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

5._IMC_2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

6._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

7._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

8._IMC_2 RUQ_828

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._IMC_2 RUQ_828

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._IMC_2

79.4 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154