SNP Profiles of AGU 3339 /12 [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	CC	CC	AA	GG	CT	CC	TT	AG	CT	TT	CC	TT
1._GC-05-086-2-37	TT	AA	CC	CC	AA	GG	CT	CC	TT	AG	CT	TT	CC	TT
2._GC-05-086-2-37	TT	AA	CC	CC	AA	GG	CT	CC	TT	AG	CT	TT	CC	TT
3._GC-05-086-2-37	TT	AA	CC	CC	AA	GG	CT	CC	TT	AG	CT	TT	CC	TT
4._GC-05-086-2-37	TT	AA	CC	CC	AA	GG	CT	CC	TT	AG	CT	TT	CC	TT
5._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__
6._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__
7._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__
8._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__
9._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__
10._AGU_3339_/12_[CHA]	TT	AA	CC	CC	__	__	__	__	TT	AG	__	TT	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	AG	CC	CG	CG	CC	AA	CC	AA	AA	AT	GG	CC
1._GC-05-086-2-37	CC	AA	AG	CC	CG	CG	CC	AA	CC	AA	AA	AT	GG	CC
2._GC-05-086-2-37	CC	AA	AG	CC	CG	CG	CC	AA	CC	AA	AA	AT	GG	CC
3._GC-05-086-2-37	CC	AA	AG	CC	CG	CG	CC	AA	CC	AA	AA	AT	GG	CC
4._GC-05-086-2-37	CC	AA	AG	CC	CG	CG	CC	AA	CC	__	AA	AT	GG	CC
5._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC
6._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC
7._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC
8._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC
9._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC
10._AGU_3339_/12_[CHA]	__	__	AG	__	__	CG	__	__	__	__	AA	AT	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	GT	AG	CG	CC	AA	GT	GG	TT	GG	CT	CG	GG
1._GC-05-086-2-37	AT	TT	GT	AG	CG	CC	AA	GT	GG	TT	GG	CT	CG	GG
2._GC-05-086-2-37	AT	TT	GT	AG	CG	CC	AA	GT	GG	TT	GG	CT	CG	GG
3._GC-05-086-2-37	AT	TT	GT	AG	CG	CC	AA	GT	GG	TT	GG	CT	CG	GG
4._GC-05-086-2-37	AT	TT	GT	AG	CG	CC	AA	GT	GG	TT	GG	CT	CG	GG
5._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__
6._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__
7._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__
8._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__
9._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__
10._AGU_3339_/12_[CHA]	AT	__	__	__	CG	__	AA	GT	__	__	GG	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CT	GG	AA	CT	AC	GG	GG	TT	TT	TT	GG	CC	CT
1._GC-05-086-2-37	TT	CT	GG	AA	CT	AC	GG	GG	TT	TT	TT	GG	CC	CT
2._GC-05-086-2-37	TT	CT	GG	AA	CT	AC	GG	GG	TT	TT	TT	GG	CC	CT
3._GC-05-086-2-37	TT	CT	GG	AA	CT	AC	GG	GG	TT	TT	TT	GG	CC	CT
4._GC-05-086-2-37	TT	CT	GG	AA	CT	AC	GG	GG	__	TT	TT	GG	CC	CT
5._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT
6._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT
7._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT
8._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT
9._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT
10._AGU_3339_/12_[CHA]	__	CT	__	__	__	__	__	__	__	TT	__	__	__	CT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CG	AA	AC	AG	GG	GT	AA	CT	CC	TT	AC	GG	AC
1._GC-05-086-2-37	CC	CG	AA	AC	AG	GG	GT	AA	CT	CC	TT	AC	GG	AC
2._GC-05-086-2-37	CC	CG	AA	AC	AG	GG	GT	AA	CT	CC	TT	AC	GG	AC
3._GC-05-086-2-37	CC	CG	AA	AC	AG	GG	GT	AA	CT	CC	TT	AC	GG	AC
4._GC-05-086-2-37	CC	CG	AA	AC	AG	GG	GT	AA	CT	CC	TT	AC	GG	AC
5._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__
6._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__
7._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__
8._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__
9._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__
10._AGU_3339_/12_[CHA]	CC	CG	__	AC	AG	GG	GT	__	__	__	TT	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	AG	AC	CC	CT	AA	CC	TT	TT	CC	TT	AG	CT	GT
1._GC-05-086-2-37	AA	AG	AC	CC	CT	AA	CC	TT	TT	CC	TT	AG	CT	GT
2._GC-05-086-2-37	AA	AG	AC	CC	CT	AA	CC	TT	TT	CC	TT	AG	CT	GT
3._GC-05-086-2-37	AA	AG	AC	CC	CT	AA	CC	TT	TT	CC	TT	AG	CT	GT
4._GC-05-086-2-37	AA	AG	AC	CC	CT	AA	CC	TT	TT	CC	TT	AG	CT	GT
5._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT
6._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT
7._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT
8._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT
9._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT
10._AGU_3339_/12_[CHA]	__	__	AC	CC	__	__	__	TT	TT	CC	__	AG	__	GT

	85	86	87
_Input profile	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-05-086-2-37	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-05-086-2-37	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-05-086-2-37	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-05-086-2-37	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AGU_3339_/12_[CHA]	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AGU_3339_/12_[CHA] GC-05-086-2-37

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

1._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
87 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
87 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

3._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
87 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._AGU_3339_/12_[CHA] GC-05-086-2-37

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._AGU_3339_/12_[CHA]

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5237 5

Dapeng Zhang, 2016

6._AGU_3339_/12_[CHA]

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5237 4

Dapeng Zhang, 2016

7._AGU_3339_/12_[CHA]

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5237 3 > FP

Dapeng Zhang, 2016

8._AGU_3339_/12_[CHA]

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5237 2 > FP

Dapeng Zhang, 2016

9._AGU_3339_/12_[CHA]

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5237 1 > FP

Dapeng Zhang, 2016

10._AGU_3339_/12_[CHA]

identical
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E280 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP1309	52	TcSNP151	53	TcSNP799	54	TcSNP899	55	TcSNP1439
56	TcSNP1442	57	TcSNP193	58	TcSNP25	59	TcSNP364	60	TcSNP144
61	TcSNP230	62	TcSNP560	63	TcSNP723	64	TcSNP731	65	TcSNP701
66	TcSNP1041	67	TcSNP917	68	Tcm003s01336581	69	Tcm003s07402719	70	Tcm001s00947643
71	Tcm006s26664133	72	Tcm002s20575712	73	TcSNP529	74	TcSNP1458	75	TcSNP60
76	TcSNP430	77	TcSNP823	78	TcSNP619	79	TcSNP994	80	TcSNP1144
81	TcSNP1156	82	TcSNP469	83	TcSNP999	84	TcSNP1253	85	TcSNP1414
86	TcSNP154	87	TcSNP240