SNP Profiles of MXC 67   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGAGCTCCCTTTGGTTCCCT
1._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
2._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
3._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
4._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
5._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
6._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
7._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
8._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
9._MXC_67___
AAAACTAAGGAGCTCCCTTTGGTTCCCT
10._MXC_67___
AAAACTAA________CTTTGG__CC__
11._MXC_67___
AAAACTAA________CTTTGG__CC__
12._MXC_67___
AAAACTAA________CTTTGG__CC__
13._MXC_67___
AAAACTAA________CTTTGG__CC__
14._MXC_67___
AAAACTAA________CTTTGG__CC__
15._MXC_67___
AAAACTAA________CTTTGG__CC__
16._MXC_67___
AAAACTAA________CTTTGG__CC__
17._MXC_67___
AAAACTAA________CTTTGG__CC__
18._MXC_67___
AAAACTAA________CTTTGG__CC__
19._MXC_67___
AAAACTAA________CTTTGG__CC__
20._MXC_67___
AAAACTAA________CTCTGG__CC__
21._MXC_67___
______AA____CC______________
22._MXC_67___
ATACCTCC________CTTTAG__CT__
23._MXC_67___
AAAA__AAGGAG__GGAG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCCGGTTAGTTAAATATCG
1._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
2._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
3._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
4._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
5._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
6._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
7._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
8._MXC_67___
ATCCAAAAGGCCGGTTAGTTAAATATCG
9._MXC_67___
ATCCAAAAGGCCGGTTAGTT__ATATCG
10._MXC_67___
______AA____GG________ATAT__
11._MXC_67___
______AA____GG________ATAT__
12._MXC_67___
______AA____GG________ATAT__
13._MXC_67___
______AA____GG________ATAT__
14._MXC_67___
______AA____GG________ATAT__
15._MXC_67___
______AA____GG________ATAT__
16._MXC_67___
______AA____GG________ATAT__
17._MXC_67___
______AA____GG________ATAT__
18._MXC_67___
______AA____GG________ATAT__
19._MXC_67___
______AA____GG________ATAT__
20._MXC_67___
______AA____GG________ATAT__
21._MXC_67___
______AATT__________________
22._MXC_67___
______AG____CG________ATAA__
23._MXC_67___
ATCCAAAACC__GGAAAAAAAAATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAGGTGGGTAGCCAA
1._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
2._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
3._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
4._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
5._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
6._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
7._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
8._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
9._MXC_67___
CGAACTGTAGCCACAGGTGGGTAGCCAA
10._MXC_67___
CGAA______CC__AGGT____AG____
11._MXC_67___
CGAA______CC__AGGT____AG____
12._MXC_67___
CGAA______CC__AGGT____AG____
13._MXC_67___
CGAA______CC__AGGT____AG____
14._MXC_67___
CGAA______CC__AGGT____AG____
15._MXC_67___
CGAA______CC__AGGT____AG____
16._MXC_67___
CGAA______CC__AGGT____AG____
17._MXC_67___
CGAA______CC__AGGT____AG____
18._MXC_67___
CGAA______CC__AGGT____AG____
19._MXC_67___
CGAA______CC__AGGT____AG____
20._MXC_67___
CGAA______CC__AGGT____AG____
21._MXC_67___
CG________CC__AG________CC__
22._MXC_67___
CGAT______CC__AAGT____AA____
23._MXC_67___
CGAAAGACAGCCACAGACCCACAGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCAAGGTTCCGGGGGGTTCCCC
1._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
2._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
3._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
4._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
5._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
6._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
7._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
8._MXC_67___
CCTTAACCAAGGTTCCGGGGGGTTCCCC
9._MXC_67___
CC__AACCAAGGTTCCGGGGGGTTCCCC
10._MXC_67___
______CC________________CCCC
11._MXC_67___
______CC________________CCCC
12._MXC_67___
______CC________________CCCC
13._MXC_67___
______CC________________CCCC
14._MXC_67___
______CC________________CCCC
15._MXC_67___
______CC________________CCCC
16._MXC_67___
______CC________________CCCC
17._MXC_67___
______CC________________CCCC
18._MXC_67___
______CC________________CCCC
19._MXC_67___
______CC________________CCCC
20._MXC_67___
______CC________________CCCC
21._MXC_67___
________AA__________________
22._MXC_67___
______CT________________CTCT
23._MXC_67___
GGAA__GGAAAGAA__GGGGCCAAGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAAGGCCCCCCGGAGAAGGGGTTAACC
1._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
2._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
3._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
4._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
5._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
6._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
7._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
8._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
9._MXC_67___
TTAAGGCCCCCCGGAGAAGGGGTTAACC
10._MXC_67___
____GG__CCCCGG__AAGGGGTT____
11._MXC_67___
____GG__CCCCGG__AAGGGGTT____
12._MXC_67___
____GG__CCCCGG__AAGGGGTT____
13._MXC_67___
____GG__CCCCGG__AAGGGGTT____
14._MXC_67___
____GG__CCCCGG__AAGGGGTT____
15._MXC_67___
____GG__CCCCGG__AAGGGGTT____
16._MXC_67___
____GG__CCCCGG__AAGGGGTT____
17._MXC_67___
____GG__CCCCGG__AAGGGGTT____
18._MXC_67___
____GG__CCCCGG__AAGGGGTT____
19._MXC_67___
____GG__CCCCGG__AAGGGGTT____
20._MXC_67___
____GG__CCCCGG__AAGGGGTT____
21._MXC_67___
__AA____________AAGG__TTAA__
22._MXC_67___
________CTACCG__AAAGGTGG____
23._MXC_67___
AAAACCGGGGCCGGAGAAGGCCAAAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCTTAAAGACAAGGCCCGCTATACTTTT
1._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
2._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
3._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
4._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
5._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
6._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
7._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
8._MXC_67___
CC__AAAGACAAGGCCCGCTATACTTTT
9._MXC_67___
CCTTAAAGACAAGGCCCGCTATACTTTT
10._MXC_67___
__TT__________CCCG______TTTT
11._MXC_67___
__TT__________CCCG______TTTT
12._MXC_67___
__TT__________CCCG______TTTT
13._MXC_67___
__TT__________CCCG______TTTT
14._MXC_67___
__TT__________CCCG______TTTT
15._MXC_67___
__TT__________CCCG______TTTT
16._MXC_67___
__TT__________CCCG______TTTT
17._MXC_67___
__TT__________CCCG______TTTT
18._MXC_67___
__TT__________CCCG______TTTT
19._MXC_67___
______________CCCG______TTTT
20._MXC_67___
__TT__________CCCG______CTTT
21._MXC_67___
______________CCCG____AC____
22._MXC_67___
__CT__________ACCG______TTCT
23._MXC_67___
__AAAAAGACAA__CCCCAGATACAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
1._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
2._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
3._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
4._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
5._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
6._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
7._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
8._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
9._MXC_67___
CTTTGGCCCCGGTTATGGX_XX_XX_XX_XX_X
10._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
11._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
12._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
13._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
14._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
15._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
16._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
17._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
18._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
19._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
20._MXC_67___
CT__GG__CCGGTT____X_XX_XX_XX_XX_X
21._MXC_67___
CT____CC__GG______X_XX_XX_XX_XX_X
22._MXC_67___
CT__GG__CTGTCT____X_XX_XX_XX_XX_X
23._MXC_67___
__AA____GG__AAATGGX_XX_XX_XX_XX_X

Input profile: MXC_67 GC-05-131-3-33

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

1._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

5._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

7._MXC_67 GC-03-014-2-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._MXC_67 GC-05-131-3-33

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._MXC_67 GC-03-014-2-02

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 1
 Dapeng Zhang, 2016

11._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 2
 Dapeng Zhang, 2016

12._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 5
 Dapeng Zhang, 2016

13._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 9
 Dapeng Zhang, 2016

14._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 16
 Dapeng Zhang, 2016

15._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 12 > F
 Dapeng Zhang, 2016

16._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 4 > FP
 Dapeng Zhang, 2016

17._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3202 6 > FP
 Dapeng Zhang, 2016

18._MXC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 5 > FP
 Dapeng Zhang, 2016

19._MXC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5333 4
 Dapeng Zhang, 2016

20._MXC_67 RUQ_104

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._MXC_67 RUQ_104

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._MXC_67

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 12 X3 Y4
 Dapeng Zhang, 2016

23._MXC_67 RUQ_104

54.4 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240