SNP Profiles of DOM 16 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	AG	CT	CT	CT	CT	AG	CT	CT	CT
1._GC-08-047-1-58	AA	AC	CT	CC	GG	AG	CT	CT	CT	CT	AG	CT	CT	CT
2._GC-08-047-1-58	AA	AC	CT	CC	GG	AG	CT	CT	CT	CT	AG	CT	CT	CT
3._GC-08-047-1-58	AA	AC	CT	CC	GG	AG	CT	CT	CT	CT	AG	CT	CT	CT
4._GC-08-047-1-58	AA	AC	CT	CC	GG	AG	CT	CT	CT	CT	AG	CT	CT	CT
5._DOM_16	AA	AC	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_
6._DOM_16	AA	AC	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_
7._DOM_16	AA	AC	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_
8._DOM_16	AA	AC	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_
9._DOM_16	AA	AC	CT	CC	_	_	_	_	CT	CT	AG	_	CT	_
10._DOM_16	AA	AA	TT	AC	_	_	_	_	CC	CT	AG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AC	AA	AG	CG	CG	CG	CT	AA	CT	GG	AT	AA	CG
1._GC-08-047-1-58	AT	AC	AA	AG	CG	CG	CG	CT	AA	CT	GG	AT	AA	CG
2._GC-08-047-1-58	AT	AC	AA	AG	CG	CG	CG	CT	AA	CT	GG	AT	AA	CG
3._GC-08-047-1-58	AT	AC	AA	AG	CG	CG	CG	CT	AA	CT	GG	AT	AA	CG
4._GC-08-047-1-58	AT	AC	AA	AG	CG	CG	CG	CT	AA	CT	GG	AT	AA	CG
5._DOM_16	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
6._DOM_16	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
7._DOM_16	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
8._DOM_16	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
9._DOM_16	_	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_
10._DOM_16	_	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	GT	AG	CC	AC	AA	GT	GT	TT	AA	CC	AG
1._GC-08-047-1-58	CG	AT	TT	GT	AG	CC	AC	AA	GT	GT	TT	AA	CC	AG
2._GC-08-047-1-58	CG	AT	TT	GT	AG	CC	AC	AA	GT	GT	TT	AA	CC	AG
3._GC-08-047-1-58	CG	AT	TT	GT	AG	CC	AC	AA	GT	GT	TT	AA	CC	AG
4._GC-08-047-1-58	CG	AT	TT	GT	AG	CC	AC	AA	GT	GT	TT	AA	CC	AG
5._DOM_16	CG	AT	_	_	_	CC	_	AA	GT	_	_	AA	_	_
6._DOM_16	CG	AT	_	_	_	CC	_	AA	GT	_	_	AA	_	_
7._DOM_16	CG	AT	_	_	_	CC	_	AA	GT	_	_	AA	_	_
8._DOM_16	CG	AT	_	_	_	CC	_	AA	GT	_	_	AA	_	_
9._DOM_16	CG	AT	_	_	_	CC	_	AA	GT	_	_	AA	_	_
10._DOM_16	GG	AA	_	_	_	CC	_	AG	TT	_	_	AG	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GT	AT	CT	AG	AA	AG	CT	AC	AG	AG	GG	TT	CT
1._GC-08-047-1-58	CG	GT	AT	CT	AG	AA	AG	CT	AC	AG	AG	GG	TT	CT
2._GC-08-047-1-58	CG	GT	AT	CT	AG	AA	AG	CT	AC	AG	AG	GG	TT	CT
3._GC-08-047-1-58	CG	GT	AT	CT	AG	AA	AG	CT	AC	AG	AG	GG	TT	CT
4._GC-08-047-1-58	CG	GT	AT	CT	AG	AA	AG	CT	AC	AG	AG	GG	TT	CT
5._DOM_16	_	_	_	CT	_	_	_	_	_	_	_	_	_	CT
6._DOM_16	_	_	_	CT	_	_	_	_	_	_	_	_	_	CT
7._DOM_16	_	_	_	CT	_	_	_	_	_	_	_	_	_	CT
8._DOM_16	_	_	_	CT	_	_	_	_	_	_	_	_	_	CT
9._DOM_16	_	_	_	CT	_	_	_	_	_	_	_	_	_	CT
10._DOM_16	_	_	_	CC	_	_	_	_	_	_	_	_	_	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CT	GT	AG	CC	CT	CT	AC	CG	AG	AA	AA	GT	GG	AG
1._GC-08-047-1-58	CT	GT	AG	CC	CT	CT	AC	CG	AG	AA	AA	GT	GG	AG
2._GC-08-047-1-58	CT	GT	AG	CC	CT	CT	AC	CG	AG	AA	AA	GT	GG	AG
3._GC-08-047-1-58	CT	GT	AG	CC	CT	CT	AC	CG	AG	AA	AA	GT	GG	AG
4._GC-08-047-1-58	CT	GT	AG	CC	CT	CT	AC	CG	AG	AA	AA	GT	GG	AG
5._DOM_16	CT	_	_	CC	_	CT	AC	CG	_	AA	AA	GT	GG	_
6._DOM_16	CT	_	_	CC	_	CT	AC	CG	_	AA	AA	GT	GG	_
7._DOM_16	CT	_	_	CC	_	CT	AC	CG	_	AA	AA	GT	GG	_
8._DOM_16	CT	_	_	CC	_	CT	AC	CG	_	AA	AA	GT	GG	_
9._DOM_16	CT	_	_	CC	_	CT	AC	CG	_	AA	AA	GT	GG	_
10._DOM_16	CC	_	_	CC	_	TT	AA	GG	_	CC	AA	TT	GT	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	CC	AG	CT	GG	CC	AC	AA	AC	CG	CC	AA	CC	TT
1._GC-08-047-1-58	CT	CC	AG	CT	GG	CC	AC	AA	AC	CG	CC	AA	CC	TT
2._GC-08-047-1-58	CT	CC	AG	CT	GG	CC	AC	AA	AC	CG	CC	AA	CC	TT
3._GC-08-047-1-58	CT	CC	AG	CT	GG	CC	AC	AA	AC	CG	CC	AA	CC	TT
4._GC-08-047-1-58	CT	CC	AG	CT	GG	CC	AC	AA	AC	CG	CC	AA	CC	TT
5._DOM_16	_	_	AG	CT	_	_	_	_	AC	CG	_	_	_	TT
6._DOM_16	_	_	AG	CT	_	_	_	_	AC	CG	_	_	_	TT
7._DOM_16	_	_	AG	CT	_	_	_	_	AC	CG	_	_	_	TT
8._DOM_16	_	_	AG	CT	_	_	_	_	AC	CG	_	_	_	TT
9._DOM_16	_	_	AG	CT	_	_	_	_	AC	CG	_	_	_	TT
10._DOM_16	_	_	AA	TT	_	_	_	_	CC	GG	_	_	_	TT

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CT	CT	GG	CC	CT	GT	CT	AT	AG	X_X	X_X	X_X	X_X
1._GC-08-047-1-58	CT	CT	CT	GG	CC	CT	GT	CT	AT	AG	X_X	X_X	X_X	X_X
2._GC-08-047-1-58	CT	CT	CT	GG	CC	CT	GT	CT	AT	AG	X_X	X_X	X_X	X_X
3._GC-08-047-1-58	CT	CT	CT	GG	CC	CT	GT	CT	AT	AG	X_X	X_X	X_X	X_X
4._GC-08-047-1-58	CT	CT	CT	GG	CC	CT	GT	CT	AT	AG	X_X	X_X	X_X	X_X
5._DOM_16	CT	CT	_	GG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X
6._DOM_16	CT	CT	_	GG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X
7._DOM_16	CT	CT	_	GG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X
8._DOM_16	CT	CT	_	GG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X
9._DOM_16	CT	CT	_	GG	_	CT	GT	CT	_	_	X_X	X_X	X_X	X_X
10._DOM_16	TT	CT	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X

Input profile: DOM_16 GC-08-047-1-58

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._DOM_16 GC-08-047-1-58

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._DOM_16 GC-08-047-1-58

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._DOM_16 GC-08-047-1-58

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._DOM_16 GC-08-047-1-58

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

5._DOM_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8158 6

Dapeng Zhang, 2016

6._DOM_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8158 5

Dapeng Zhang, 2016

7._DOM_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8158 4

Dapeng Zhang, 2016

8._DOM_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8158 2

Dapeng Zhang, 2016

9._DOM_16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8158 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._DOM_16

58.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B192 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240