SNP Profiles of POUND 18   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTACGGAGCCCCCCCCGGCTTTAA
1._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
2._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
3._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
4._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
5._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
6._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
7._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
8._POUND_18___
AACCCTACGGAGCCCCCCCCGGCTTTAA
9._POUND_18___
AACCCTAC________CCCCGGCT____
10._POUND_18___
AACCCTAC________CCCCGGCT____
11._POUND_18___
AACCCTAC________CCCCGGCT____
12._POUND_18___
AACCCTAC________CCCCGGCT____
13._POUND_18___
AACCCTAC________CCCCGGCT____
14._POUND_18___
AACCCTAC________CCCCGGCT____
15._POUND_18___
AACCCTAC________CCCCGGCT____
16._POUND_18___
AACCCTAC________CCCCGGCT____
17._POUND_18___
AACCCTAC________CCCCGGCT____
18._POUND_18___
AACCCTAC________CCCCGGCT____
19._POUND_18___
AACCCTAC________CCCCAGCT____
20._POUND_18___
____CTAC____TT__CC____TT____
21._POUND_18___
______AC____TT______________
22._POUND_18___
______AC____TT______________
23._POUND_18___
AACC__ACGGAG__GGGG__GGAGAATT
24._POUND_18___
AACC__ACGGAG__GGGG__GGAGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCGCCGGCCAATTGGTTAACCCCAA
1._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
2._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
3._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
4._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
5._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
6._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
7._POUND_18___
AAGGCGCCGGCCAATTGGTTAACCCCAA
8._POUND_18___
__GGCGCCGGCCAATTGGTTAACCCCAA
9._POUND_18___
__GG____GG________TTAA__CCAA
10._POUND_18___
__GG____GG________TTAA__CCAA
11._POUND_18___
__GG____GG________TTAA__CCAA
12._POUND_18___
__GG____GG________TTAA__CCAA
13._POUND_18___
__GG____GG________TTAA__CCAA
14._POUND_18___
__GG____GG________TTAA__CCAA
15._POUND_18___
__GG____GG________TTAA__CCAA
16._POUND_18___
__GG____GG________TTAA__CCAA
17._POUND_18___
__GG____GG________TTAA__CCAA
18._POUND_18___
__GG____GG________TTAA__CCAA
19._POUND_18___
__GG____GG________TTAA__CCAA
20._POUND_18___
______CC________GG__AACCCC__
21._POUND_18___
__GGCT__________________CC__
22._POUND_18___
__GGCT__________________CC__
23._POUND_18___
AAGGCG__GGGGAAAAGGTTAAGGGGAA
24._POUND_18___
AAGGCG__GGGGAAAAGGTTAAGGGGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAAGTGGTTAACCGGCCGG
1._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
2._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
3._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
4._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
5._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
6._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
7._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
8._POUND_18___
TTGGGGGGCCAAGTGGTTAACCGGCCGG
9._POUND_18___
______GG__AAGT____AA________
10._POUND_18___
______GG__AAGT____AA________
11._POUND_18___
______GG__AAGT____AA________
12._POUND_18___
______GG__AAGT____AA________
13._POUND_18___
______GG__AAGT____AA________
14._POUND_18___
______GG__AAGT____AA________
15._POUND_18___
______GG__AAGT____AA________
16._POUND_18___
______GG__AAGT____AA________
17._POUND_18___
______GG__AAGT____AA________
18._POUND_18___
______GG__AAGT____AA________
19._POUND_18___
______GG__AAGT____AG________
20._POUND_18___
____GGGGCCAAGT____AACC____GG
21._POUND_18___
______GG__AA________CC______
22._POUND_18___
______GG__AA________CC______
23._POUND_18___
AACCGGGGCCAAACCCAAAAGGGGGGCC
24._POUND_18___
AACCGGGGCCAAACCCAAAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAGAGAACCCCGGGGGTTTCTCCTT
1._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
2._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
3._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
4._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
5._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
6._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
7._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
8._POUND_18___
TTTTAGAGAACCCCGGGGGTTTCTCCTT
9._POUND_18___
__TT__________________CTCC__
10._POUND_18___
__TT__________________CTCC__
11._POUND_18___
__TT__________________CTCC__
12._POUND_18___
__TT__________________CTCC__
13._POUND_18___
__TT__________________CTCC__
14._POUND_18___
__TT__________________CTCC__
15._POUND_18___
__TT__________________CTCC__
16._POUND_18___
__TT__________________CTCC__
17._POUND_18___
__TT__________________CTCC__
18._POUND_18___
__TT__________________CTCC__
19._POUND_18___
__TT__________________CTCC__
20._POUND_18___
TT____AG____________TTCT__TT
21._POUND_18___
______AG____________________
22._POUND_18___
______AG____________________
23._POUND_18___
__AA__AGAAGG__GGGGACAAAGGGAA
24._POUND_18___
__AA__AGAAGG__GGGGACAAAGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCGCCTTCCGGGGACAAGTGGGGTTCG
1._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
2._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
3._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
4._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
5._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
6._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
7._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
8._POUND_18___
GGCGCCTTCCGGGGACAAGTGGGGTTCG
9._POUND_18___
__CG__TTCCGG__ACAAGTGG______
10._POUND_18___
__CG__TTCCGG__ACAAGTGG______
11._POUND_18___
__CG__TTCCGG__ACAAGTGG______
12._POUND_18___
__CG__TTCCGG__ACAAGTGG______
13._POUND_18___
__CG__TTCCGG__ACAAGTGG______
14._POUND_18___
__CG__TTCCGG__ACAAGTGG______
15._POUND_18___
__CG__TTCCGG__ACAAGTGG______
16._POUND_18___
__CG__TTCCGG__ACAAGTGG______
17._POUND_18___
__CG__TTCCGG__ACAAGTGG______
18._POUND_18___
______TTCCGG__ACAAGTGG______
19._POUND_18___
__CG__TTCCGG__ACAAGTGG______
20._POUND_18___
__CGCCTTCC__GGACAAGTGGGG____
21._POUND_18___
GG____________ACAA__GGGG____
22._POUND_18___
GG____________ACAA__GGGG____
23._POUND_18___
GGCGGGAACCGGGGACAAACCCGG____
24._POUND_18___
GGCGGGAACCGGGGACAAACCCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCAAAACCCCAGACCGCCAAACCCTT
1._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
2._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
3._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
4._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
5._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
6._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
7._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
8._POUND_18___
AACCAAAACCCCAGACCGCCAAACCCTT
9._POUND_18___
AACC__________ACCG______CCTT
10._POUND_18___
AACC__________ACCG______CCTT
11._POUND_18___
AACC__________ACCG______CCTT
12._POUND_18___
AACC__________ACCG______CCTT
13._POUND_18___
AACC__________ACCG______CCTT
14._POUND_18___
AACC__________ACCG______CCTT
15._POUND_18___
AACC__________ACCG______CCTT
16._POUND_18___
AACC__________ACCG______CCTT
17._POUND_18___
AACC__________ACCG______CCTT
18._POUND_18___
AACC__________ACCG______CCTT
19._POUND_18___
AACC__________ACCG______CCTT
20._POUND_18___
______________ACCG____ACCC__
21._POUND_18___
AA____________ACCG____AC____
22._POUND_18___
AA____________ACCG____AC____
23._POUND_18___
__GGAAAACCCC__ACCGGGAAACGGAA
24._POUND_18___
__GGAAAACCCC__ACCGGGAAACGGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
1._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
2._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
3._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
4._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
5._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
6._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
7._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
8._POUND_18___
CCCTAACCCTGTCTTTGGX_XX_XX_XX_XX_X
9._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
10._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
11._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
12._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
13._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
14._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
15._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
16._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
17._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
18._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
19._POUND_18___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
20._POUND_18___
____AACCCTGT______X_XX_XX_XX_XX_X
21._POUND_18___
CC____CC__GT______X_XX_XX_XX_XX_X
22._POUND_18___
CC____CC__GT______X_XX_XX_XX_XX_X
23._POUND_18___
__AG____AGACAGAAGGX_XX_XX_XX_XX_X
24._POUND_18___
__AG____AGACAGAAGGX_XX_XX_XX_XX_X

Input profile: POUND_18 GC-08-064-1-86

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._POUND_18 GC-08-064-1-86

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

10._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

11._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

12._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

13._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

14._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

15._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

16._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

17._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016

18._POUND_18

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

19._POUND_18 RUQ_874

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._POUND_18 RUQ_874

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_18 RUQ_874B

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._POUND_18 RUQ_874

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

23._POUND_18 GC-08-64-1-86

53.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._POUND_18 RUQ_874

53.2 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240