SNP Profiles of LCT EEN 280 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
1._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
2._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
3._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
4._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
5._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
6._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
7._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
8._LCT_EEN_280	AA	AA	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_
9._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
10._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
11._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
12._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
13._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
14._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
15._GC-08-070-1-92	AA	AA	CC	CC	AA	TT	CC	CC	TT	AA	TT	CT	TT	AC
16._LCT_EEN_280	AA	AC	CC	CC	_	_	_	CC	TT	AA	TT	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	GG	CG	CT	AA	TT	AG	AA	TT	CG	CG	AA	TT
1._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
2._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
3._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
4._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
5._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
6._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
7._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
8._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_
9._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
10._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
11._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
12._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
13._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
14._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
15._GC-08-070-1-92	GG	CC	GG	CG	CC	AA	TT	AG	AA	TT	CG	CG	AA	TT
16._LCT_EEN_280	GG	_	_	CG	_	_	_	_	AA	TT	_	CG	AA	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
1._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
2._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
3._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
4._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
5._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
6._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
7._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
8._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_
9._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
10._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
11._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
12._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
13._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
14._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT
15._GC-08-070-1-92	TT	AG	GG	CC	AA	GG	GG	GT	GG	CC	GG	CC	GG	TT
16._LCT_EEN_280	_	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
1._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
2._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
3._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
4._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
5._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
6._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
7._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
8._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
9._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
10._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
11._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
12._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
13._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
14._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
15._GC-08-070-1-92	TT	AG	AA	AA	CC	AA	GG	GG	TT	TT	TT	CC	TT	GG
16._LCT_EEN_280	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
1._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
2._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
3._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
4._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
5._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
6._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
7._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
8._LCT_EEN_280	CC	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT
9._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
10._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
11._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
12._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
13._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
14._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
15._GC-08-070-1-92	CC	CC	TT	CC	GG	AA	AC	AG	GG	GG	AA	CC	CC	TT
16._LCT_EEN_280	_	_	TT	CC	GG	_	AC	AG	GG	GG	_	_	_	TT

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
1._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
2._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
3._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
4._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
5._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
6._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
7._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
8._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_
9._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
10._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
11._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
12._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
13._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
14._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
15._GC-08-070-1-92	CC	GG	AA	CC	GG	AA	CC	CC	AA	CC	CT	CT	CC	CT
16._LCT_EEN_280	_	_	_	_	_	AA	CC	_	_	_	CT	CT	CC	_

	85	86	87	88	89	90	91
_Input profile	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-070-1-92	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._LCT_EEN_280	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_280 GC-08-070-1-92

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

1._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 9 > FP

Dapeng Zhang, 2016

2._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 6 > FP

Dapeng Zhang, 2016

3._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 2 > FP

Dapeng Zhang, 2016

4._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 1 > FP

Dapeng Zhang, 2016

5._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 11

Dapeng Zhang, 2016

6._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 10

Dapeng Zhang, 2016

7._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 7

Dapeng Zhang, 2016

8._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

12._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

14._LCT_EEN_280 GC-08-070-1-92

99.5 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

15._LCT_EEN_280 GC-08-070-1-92

98.9 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP4

16._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A144 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP891	12	TcSNP122	13	TcSNP316	14	TcSNP521	15	TcSNP1062
16	TcSNP836	17	TcSNP878	18	TcSNP929	19	TcSNP413	20	TcSNP653
21	TcSNP1149	22	TcSNP174	23	TcSNP32	24	TcSNP372	25	TcSNP448
26	TcSNP872	27	TcSNP953	28	TcSNP1034	29	TcSNP1175	30	TcSNP1111
31	TcSNP577	32	TcSNP90	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP917
71	Tcm003s01336581	72	Tcm003s07402719	73	Tcm001s00947643	74	Tcm006s26664133	75	Tcm002s20575712
76	TcSNP529	77	TcSNP1458	78	TcSNP60	79	TcSNP430	80	TcSNP823
81	TcSNP619	82	TcSNP994	83	TcSNP1144	84	TcSNP1156	85	TcSNP469
86	TcSNP999	87	TcSNP242	88	TcSNP1253	89	TcSNP1414	90	TcSNP154
91	TcSNP240