SNP Profiles of BE 8 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	AA	GG	AG	CT	CC	CT	CT	GG	TT	CT	CT
1._JA_9_/37_[POU]___	AA	AA	TT	AA	__	__	__	__	CT	CT	GG	__	CT	__
2._JA_9_/37_[POU]___	AA	__	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC
3._JA_9_/37_[POU]___	AA	__	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC
4._JA_9_/37_[POU]___	AA	__	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC
5._JA_9_/37_[POU]___	AA	__	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC
6._JA_9_/37_[POU]___	AA	__	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__
7._JA_9_/37_[POU]___	AA	__	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__
8._JA_9_/37_[POU]___	AA	__	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__
9._JA_9_/37_[POU]___	AA	__	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__
10._JA_9_/37_[POU]___	AA	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._JA_9_/37_[POU]___	AA	__	__	AA	GG	GG	__	GG	GG	__	GG	AA	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	AG	GG	CC	CC	CT	AA	TT	GG	AT	AA	CG
1._JA_9_/37_[POU]___	__	__	__	AG	__	__	CC	__	__	__	__	AT	AA	__
2._JA_9_/37_[POU]___	AA	CC	__	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC
3._JA_9_/37_[POU]___	AA	CC	__	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC
4._JA_9_/37_[POU]___	AA	CC	__	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC
5._JA_9_/37_[POU]___	AA	CC	__	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC
6._JA_9_/37_[POU]___	__	__	__	AA	__	__	CC	__	__	__	__	TT	AA	__
7._JA_9_/37_[POU]___	__	__	__	AA	__	__	CC	__	__	__	__	TT	AA	__
8._JA_9_/37_[POU]___	__	__	__	AA	__	__	CC	__	__	__	__	TT	AA	__
9._JA_9_/37_[POU]___	__	__	__	AA	__	__	CC	__	__	__	__	TT	AA	__
10._JA_9_/37_[POU]___	__	__	__	AA	__	__	GG	__	__	__	__	TT	AA	__
11._JA_9_/37_[POU]___	TT	CC	GG	AA	CC	__	CC	AA	GG	AA	GG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	GT	AG	CC	CC	AG	GT	GT	TT	GG	CT	AG
1._JA_9_/37_[POU]___	CG	AT	__	__	__	CC	__	AG	GT	__	__	GG	__	__
2._JA_9_/37_[POU]___	GG	AA	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA
3._JA_9_/37_[POU]___	GG	AA	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA
4._JA_9_/37_[POU]___	GG	AA	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA
5._JA_9_/37_[POU]___	GG	AA	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA
6._JA_9_/37_[POU]___	GG	AA	__	__	__	CC	__	GG	TT	__	__	AA	__	__
7._JA_9_/37_[POU]___	GG	AA	__	__	__	CC	__	GG	TT	__	__	AA	__	__
8._JA_9_/37_[POU]___	GG	AA	__	__	__	CC	__	GG	TT	__	__	AA	__	__
9._JA_9_/37_[POU]___	GG	AA	__	__	__	CC	__	GG	TT	__	__	AA	__	__
10._JA_9_/37_[POU]___	GG	AA	__	__	__	CC	__	AG	TT	__	__	AA	__	__
11._JA_9_/37_[POU]___	CC	AA	AA	CC	AA	CC	CC	GG	AA	CC	AA	AA	AA	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GT	TT	CC	AA	GG	AG	CC	AC	AG	AG	GT	CT	CT
1._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CT	CT
2._JA_9_/37_[POU]___	CC	GG	TT	CC	AA	GG	__	CC	CC	GG	GG	TT	CC	TT
3._JA_9_/37_[POU]___	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	TT	CC	TT
4._JA_9_/37_[POU]___	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	TT	CC	TT
5._JA_9_/37_[POU]___	CC	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	TT	CC	TT
6._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CC	TT
7._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CC	TT
8._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CC	TT
9._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CC	TT
10._JA_9_/37_[POU]___	__	__	__	CC	__	__	__	__	__	__	__	__	CT	TT
11._JA_9_/37_[POU]___	GG	CC	__	GG	__	GG	AA	GG	__	GG	GG	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AG	CC	CT	CT	AC	CG	GG	AC	AG	GT	GT	AG	CT
1._JA_9_/37_[POU]___	__	__	CC	__	CT	AC	CG	__	AC	AG	GT	GT	__	__
2._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT
3._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT
4._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT
5._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT
6._JA_9_/37_[POU]___	__	__	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__
7._JA_9_/37_[POU]___	__	__	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__
8._JA_9_/37_[POU]___	__	__	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__
9._JA_9_/37_[POU]___	__	__	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__
10._JA_9_/37_[POU]___	__	__	CC	__	CC	AC	GG	__	CC	AG	TT	GG	__	__
11._JA_9_/37_[POU]___	AA	AA	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	AC	AG	AC	AA	AA	CC	GG	CC	AT	AC	TT
1._JA_9_/37_[POU]___	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
2._JA_9_/37_[POU]___	CC	GG	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
3._JA_9_/37_[POU]___	CC	GG	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
4._JA_9_/37_[POU]___	CC	GG	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
5._JA_9_/37_[POU]___	CC	GG	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
6._JA_9_/37_[POU]___	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
7._JA_9_/37_[POU]___	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
8._JA_9_/37_[POU]___	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
9._JA_9_/37_[POU]___	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
10._JA_9_/37_[POU]___	__	AA	TT	__	__	__	__	__	CC	GG	__	__	__	CT
11._JA_9_/37_[POU]___	__	__	AA	AA	AA	CC	AA	__	CC	CC	GG	TT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CT	CC	AG	CT	CT	GT	CT	AA	GG	X_X	X_X	X_X	X_X
1._JA_9_/37_[POU]___	CT	CT	__	AG	__	CT	GT	CT	__	__	X_X	X_X	X_X	X_X
2._JA_9_/37_[POU]___	TT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._JA_9_/37_[POU]___	TT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._JA_9_/37_[POU]___	TT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._JA_9_/37_[POU]___	TT	TT	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
6._JA_9_/37_[POU]___	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
7._JA_9_/37_[POU]___	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
8._JA_9_/37_[POU]___	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
9._JA_9_/37_[POU]___	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
10._JA_9_/37_[POU]___	TT	TT	__	AA	__	CC	GT	TT	__	__	X_X	X_X	X_X	X_X
11._JA_9_/37_[POU]___	AA	__	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

1._JA_9_/37_[POU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8193 2 > FP

Dapeng Zhang, 2016

2._JA_9_/37_[POU] GC-08-071-1-93

70.3 %
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._JA_9_/37_[POU] GC-08-071-1-93

70.1 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._JA_9_/37_[POU] GC-08-071-1-93

70.1 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

5._JA_9_/37_[POU] GC-08-071-1-93

70.1 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

6._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 4 > FP

Dapeng Zhang, 2016

7._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 3 > FP

Dapeng Zhang, 2016

8._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 1 > FP

Dapeng Zhang, 2016

9._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 5

Dapeng Zhang, 2016

10._JA_9_/37_[POU]

65 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E394 T8

Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

32.9 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 93, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240