SNP Profiles of SC 9 [UNK] View Data

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_Input profile	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
1._JA_9_/37_[POU]___	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
2._JA_9_/37_[POU]___	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
3._JA_9_/37_[POU]___	AA	TT	AA	GG	GG	CC	CC	CC	CC	GG	TT	CC	CC	AA
4._JA_9_/37_[POU]___	AA	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__	__
5._JA_9_/37_[POU]___	AA	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__	__
6._JA_9_/37_[POU]___	AA	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__	__
7._JA_9_/37_[POU]___	AA	TT	AA	__	__	__	__	CC	CC	GG	__	CC	__	__
8._JA_9_/37_[POU]___	AA	TT	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
9._JA_9_/37_[POU]___	AA	TT	AA	GG	AG	CT	CC	CT	CT	GG	TT	CT	CT	AA
10._JA_9_/37_[POU]___	AA	TT	AA	__	__	__	__	CT	CT	GG	__	CT	__	__
11._JA_9_/37_[POU]___	AA	__	AA	GG	GG	__	GG	GG	__	GG	AA	GG	GG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
1._JA_9_/37_[POU]___	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
2._JA_9_/37_[POU]___	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
3._JA_9_/37_[POU]___	CC	AA	GG	CC	CC	TT	AA	TT	GG	TT	AA	CC	GG	AA
4._JA_9_/37_[POU]___	__	AA	__	__	CC	__	__	__	__	TT	AA	__	GG	AA
5._JA_9_/37_[POU]___	__	AA	__	__	CC	__	__	__	__	TT	AA	__	GG	AA
6._JA_9_/37_[POU]___	__	AA	__	__	CC	__	__	__	__	TT	AA	__	GG	AA
7._JA_9_/37_[POU]___	__	AA	__	__	CC	__	__	__	__	TT	AA	__	GG	AA
8._JA_9_/37_[POU]___	__	AA	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
9._JA_9_/37_[POU]___	AC	AG	GG	CC	CC	CT	AA	TT	GG	AT	AA	CG	CG	AT
10._JA_9_/37_[POU]___	__	AG	__	__	CC	__	__	__	__	AT	AA	__	CG	AT
11._JA_9_/37_[POU]___	CC	AA	CC	__	CC	AA	GG	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
1._JA_9_/37_[POU]___	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
2._JA_9_/37_[POU]___	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
3._JA_9_/37_[POU]___	TT	GG	AA	CC	CC	GG	TT	GG	TT	AA	TT	AA	CC	GG
4._JA_9_/37_[POU]___	__	__	__	CC	__	GG	TT	__	__	AA	__	__	__	__
5._JA_9_/37_[POU]___	__	__	__	CC	__	GG	TT	__	__	AA	__	__	__	__
6._JA_9_/37_[POU]___	__	__	__	CC	__	GG	TT	__	__	AA	__	__	__	__
7._JA_9_/37_[POU]___	__	__	__	CC	__	GG	TT	__	__	AA	__	__	__	__
8._JA_9_/37_[POU]___	__	__	__	CC	__	AG	TT	__	__	AA	__	__	__	__
9._JA_9_/37_[POU]___	TT	GT	AG	CC	CC	AG	GT	GT	TT	GG	CT	AG	CC	GT
10._JA_9_/37_[POU]___	__	__	__	CC	__	AG	GT	__	__	GG	__	__	__	__
11._JA_9_/37_[POU]___	AA	CC	AA	CC	CC	GG	AA	CC	AA	AA	AA	AA	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
1._JA_9_/37_[POU]___	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
2._JA_9_/37_[POU]___	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
3._JA_9_/37_[POU]___	TT	CC	AA	GG	CC	CC	GG	GG	TT	TT	CC	TT	TT	AA
4._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CC	TT	__	__
5._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CC	TT	__	__
6._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CC	TT	__	__
7._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CC	TT	__	__
8._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CT	TT	__	__
9._JA_9_/37_[POU]___	TT	CC	AA	GG	CC	AC	AG	AG	GT	__	CT	CT	TT	AG
10._JA_9_/37_[POU]___	__	CC	__	__	__	__	__	__	__	__	CT	CT	__	__
11._JA_9_/37_[POU]___	__	GG	__	GG	GG	__	GG	GG	AA	AA	GG	AA	AA	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
1._JA_9_/37_[POU]___	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
2._JA_9_/37_[POU]___	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
3._JA_9_/37_[POU]___	CC	TT	CC	AA	GG	GG	CC	AA	TT	GG	GG	TT	CC	GG
4._JA_9_/37_[POU]___	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__	__	GG
5._JA_9_/37_[POU]___	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__	__	GG
6._JA_9_/37_[POU]___	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__	__	GG
7._JA_9_/37_[POU]___	CC	__	CC	AA	GG	__	CC	AA	TT	GG	__	__	__	GG
8._JA_9_/37_[POU]___	CC	__	CC	AC	GG	__	CC	AG	TT	GG	__	__	__	AA
9._JA_9_/37_[POU]___	CC	CT	CT	AC	CG	GG	AC	AG	GT	GT	AG	CT	CC	GG
10._JA_9_/37_[POU]___	CC	__	CT	AC	CG	__	AC	AG	GT	GT	__	__	__	GG
11._JA_9_/37_[POU]___	GG	AA	GG	AA	GG	GG	CC	AA	AA	CC	GG	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
1._JA_9_/37_[POU]___	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
2._JA_9_/37_[POU]___	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
3._JA_9_/37_[POU]___	TT	AA	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	TT	TT
4._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	TT	TT	TT
5._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	TT	TT	TT
6._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	TT	TT	TT
7._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	TT	TT	TT
8._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	CT	TT	TT
9._JA_9_/37_[POU]___	TT	AC	AG	AC	AA	AA	CC	GG	CC	AT	AC	TT	CT	CT
10._JA_9_/37_[POU]___	TT	__	__	__	__	__	CC	GG	__	__	__	TT	CT	CT
11._JA_9_/37_[POU]___	AA	AA	AA	CC	AA	__	CC	CC	GG	TT	AA	AA	AA	__

	85	86	87	88	89	90	91	92
_Input profile	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._JA_9_/37_[POU]___	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._JA_9_/37_[POU]___	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._JA_9_/37_[POU]___	TT	AA	TT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._JA_9_/37_[POU]___	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
5._JA_9_/37_[POU]___	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
6._JA_9_/37_[POU]___	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
7._JA_9_/37_[POU]___	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
8._JA_9_/37_[POU]___	__	AA	__	CC	GT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
9._JA_9_/37_[POU]___	CC	AG	CT	CT	GT	CT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._JA_9_/37_[POU]___	__	AG	__	CT	GT	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
11._JA_9_/37_[POU]___	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: JA_9_/37_[POU] GC-08-071-1-93

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

3._JA_9_/37_[POU] GC-08-071-1-93

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

4._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 4 > FP

Dapeng Zhang, 2016

5._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 3 > FP

Dapeng Zhang, 2016

6._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 1 > FP

Dapeng Zhang, 2016

7._JA_9_/37_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 5

Dapeng Zhang, 2016

8._JA_9_/37_[POU]

84.6 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E394 T8

Dapeng Zhang, 2016

9._JA_9_/37_[POU] GC-08-071-1-93

70.3 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._JA_9_/37_[POU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8193 2 > FP

Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

46.2 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 93, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240