SNP Profiles of SLC-24   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTCCGGAGCCCCCTCTGGTTCCCC
1._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
2._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
3._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
4._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
5._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
6._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
7._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
8._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
9._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
10._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
11._GC-08-093-2-16
AAAATTCCGGAGCCCCCTCTGGTTCCCC
12._SLC_24
AAAATTCC____CTCTGG_CC_
13._SLC_24
AAAATTCC____CTCTGG_CC_
14._SLC_24
AAAATTCC____CTCTGG_CC_
15._SLC_24
AAAATTCC____CTCTGG_CC_
16._SLC_24
AAAATTCC____CTCTGG_CC_
17._SLC_24
AAAATTCC____CTCTGG_CC_
18._SLC_24
AAAATTCC____CTCTGG_CC_
19._SLC_24
AAAATTCC____CTCTGG_CC_
20._SLC_24
AAAATTCC____CTCTGG_CC_
21._SLC_24
AAAATTCC____CTCTGG_CC_
22._SLC_24
AAAATTCC____CTCTGG_CC_
23._SLC_24
AAAATTCC____CTCTGG_CC_
24._GC-08-093-2-16
ATAATTCCAGAGCTCTCCCCAGTTCTCT
25._SLC_24
ATAATTCC____CCCCAG_CT_
26._SLC_24
ATACTTCC____CCCCAG_CT_
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGTTAATTGGATATCG
1._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
2._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
3._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
4._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
5._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
6._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
7._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
8._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
9._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
10._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
11._GC-08-093-2-16
ATCCAAAAGGCGGGTTAATTGGATATCG
12._SLC_24
___AA__GG____ATAT_
13._SLC_24
___AA__GG____ATAT_
14._SLC_24
___AA__GG____ATAT_
15._SLC_24
___AA__GG____ATAT_
16._SLC_24
___AA__GG____ATAT_
17._SLC_24
___AA__GG____ATAT_
18._SLC_24
___AA__GG____ATAT_
19._SLC_24
___AA__GG____ATAT_
20._SLC_24
___AA__GG____ATAT_
21._SLC_24
___AA__GG____ATAT_
22._SLC_24
___AA__GG____ATAT_
23._SLC_24
___AA__GG____ATAT_
24._GC-08-093-2-16
ATACAAAGCGCGGGCTAACTGGTTAACC
25._SLC_24
___AG__GG____TTAA_
26._SLC_24
___AG__GG____TTAA_
 2930313233343536373839404142
_Input profile
CGAACTGGAGCCACAGGTGGGTAACTAA
1._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
2._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
3._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
4._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
5._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
6._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
7._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
8._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
9._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
10._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAACTAA
11._GC-08-093-2-16
CGAACTGGAGCCACAGGTGGGTAA_AA
12._SLC_24
CGAA___CC_AGGT__AA__
13._SLC_24
CGAA___CC_AGGT__AA__
14._SLC_24
CGAA___CC_AGGT__AA__
15._SLC_24
CGAA___CC_AGGT__AA__
16._SLC_24
CGAA___CC_AGGT__AA__
17._SLC_24
CGAA___CC_AGGT__AA__
18._SLC_24
CGAA___CC_AGGT__AA__
19._SLC_24
CGAA___CC_AGGT__AA__
20._SLC_24
CGAA___CC_AGGT__AA__
21._SLC_24
CGAA___CC_AGGT__AA__
22._SLC_24
CGAA___CC_AGGT__AA__
23._SLC_24
CGAA___CC_AGGT__AA__
24._GC-08-093-2-16
GGTTTTGGGGGGCCAAGGGGTTAGCTAG
25._SLC_24
GGTT___GG_AAGG__AG__
26._SLC_24
GGTT___GG_AAGG__AG__
 4344454647484950515253545556
_Input profile
CCGTATCCAAGGAGCTCCGGGGTTCTTT
1._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
2._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
3._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
4._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
5._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
6._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
7._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
8._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTT_TT
9._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
10._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
11._GC-08-093-2-16
CCGTATCCAAGGAGCTCCGGGGTTCTTT
12._SLC_24
___CC________CTTT
13._SLC_24
___CC________CTTT
14._SLC_24
___CC________CTTT
15._SLC_24
___CC________CTTT
16._SLC_24
___CC________CTTT
17._SLC_24
___CC________CTTT
18._SLC_24
___CC________CTTT
19._SLC_24
___CC________CTTT
20._SLC_24
___CC________CTTT
21._SLC_24
___CC________CTTT
22._SLC_24
___CC_________TT
23._SLC_24
___CC________CTTT
24._GC-08-093-2-16
CCGGTTCTAAGGAACCAAGGAGTTCTCT
25._SLC_24
___CT________CTCT
26._SLC_24
___CT________CTCT
 5758596061626364656667686970
_Input profile
GTGGCCTTCTAAGGGGACAGGTTTAGTT
1._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
2._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
3._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
4._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
5._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
6._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
7._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
8._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
9._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
10._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
11._GC-08-093-2-16
GTGGCCTTCTAAGGGGACAGGTTTAGTT
12._SLC_24
__CC_CTAAGG_ACAGGTTT__
13._SLC_24
__CC_CTAAGG_ACAGGTTT__
14._SLC_24
__CC_CTAAGG_ACAGGTTT__
15._SLC_24
__CC_CTAAGG_ACAGGTTT__
16._SLC_24
__CC_CTAAGG_ACAGGTTT__
17._SLC_24
__CC_CTAAGG_ACAGGTTT__
18._SLC_24
__CC_CTAAGG_ACAGGTTT__
19._SLC_24
__CC_CTAAGG_ACAGGTTT__
20._SLC_24
__CC_CTAAGG_ACAGGTTT__
21._SLC_24
__CC_CTAAGG_ACAGGTTT__
22._SLC_24
__CC_CTAAGG_ACAGGTTT__
23._SLC_24
__CC_CTAAGG_ACAGGTTT__
24._GC-08-093-2-16
TTAGCCCTCCACGGGGCCAAGTGTAGCT
25._SLC_24
__CC_CCACGG_CCAAGTGT__
26._SLC_24
__CC_CCACGG_CCAAGTGT__
 7172737475767778798081828384
_Input profile
CCTTACAGCCAAAGCCGGCTAAACCTTT
1._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
2._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
3._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
4._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
5._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
6._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
7._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
8._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
9._GC-08-093-2-16
CC_ACAGCCAAAGCCGGCTAAACCTTT
10._GC-08-093-2-16
CCTTACAGCCAA_CCGGCTAAACCTTT
11._GC-08-093-2-16
CCTTACAGCCAAAGCCGGCTAAACCTTT
12._SLC_24
_TT_____CCGG___CTTT
13._SLC_24
_TT_____CCGG___CTTT
14._SLC_24
_TT_____CCGG___CTTT
15._SLC_24
_TT_____CCGG___CTTT
16._SLC_24
_TT_____CCGG___CTTT
17._SLC_24
_TT_____CCGG___CTTT
18._SLC_24
_TT_____CCGG___CTTT
19._SLC_24
_TT_____CCGG___CTTT
20._SLC_24
_TT_____CCGG___CTTT
21._SLC_24
_TT_____CCGG___CTTT
22._SLC_24
_TT_____CCGG___CTTT
23._SLC_24
_______CCGG___CTTT
24._GC-08-093-2-16
CCCTACAGACAAAAACGGCCAACCCTTT
25._SLC_24
_CT_____ACGG___CTTT
26._SLC_24
_CT_____ACGG___CTTT
 858687888990919293     
_Input profile
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
11._GC-08-093-2-16
TTTTAATTCCGTTTAAGGX_XX_XX_XX_XX_X
12._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
13._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
14._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
15._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
16._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
17._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
18._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
19._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
20._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
21._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
22._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
23._SLC_24
TT_AA_CCGTTT__X_XX_XX_XX_XX_X
24._GC-08-093-2-16
CTTTAGCTCCTTTTAAGGX_XX_XX_XX_XX_X
25._SLC_24
CT_AG_CCTTTT__X_XX_XX_XX_XX_X
26._SLC_24
CT_AG_CCTTTT__X_XX_XX_XX_XX_X

Input profile: SLC_24 GC-08-093-2-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

2._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._SLC_24 GC-08-093-2-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

8._SLC_24 GC-08-093-2-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 17
Notes: 17
 Mars, 2018

9._SLC_24 GC-08-093-2-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._SLC_24 GC-08-093-2-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._SLC_24 GC-08-093-2-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 5 > FP
 Dapeng Zhang, 2016

13._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 2 > FP
 Dapeng Zhang, 2016

14._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 18
 Dapeng Zhang, 2016

15._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 14
 Dapeng Zhang, 2016

16._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 12
 Dapeng Zhang, 2016

17._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 10
 Dapeng Zhang, 2016

18._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 9
 Dapeng Zhang, 2016

19._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 8
 Dapeng Zhang, 2016

20._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 7
 Dapeng Zhang, 2016

21._SLC_24

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 6
 Dapeng Zhang, 2016

22._SLC_24

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 17
 Dapeng Zhang, 2016

23._SLC_24

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 16
 Dapeng Zhang, 2016

24._SLC_24 GC-08-093-2-16

68.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._SLC_24

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

26._SLC_24

62.8 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 250
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240