SNP Profiles of MARPER 42   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
5._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
6._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
7._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
8._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
9._IMC_47___
AAACCTAC________CTCTAG__CT__
10._IMC_47___
AAACCTAC________CTCTAG__CT__
11._IMC_47___
AAACCTAC________CTCTAG__CT__
12._IMC_47___
AAACCTAC________CTCTAG__CT__
13._IMC_47___
AAACCTAC________CTCTAG__CT__
14._IMC_47___
AAACCTAC________CTCTAG__CT__
15._IMC_47___
AAACCTAC________CTCTAG__CT__
16._IMC_47___
AAACCTAC________CTCTAG__CT__
17._IMC_47___
AAACCTAC________CTCTAG__CT__
18._IMC_47___
AAACCTAC________CCCTAG__CT__
19._IMC_47___
ATCCCCAC________CCCTAG__CT__
20._IMC_47___
____CCAC____TT__CC____TTTT__
21._IMC_47___
______AC____TT______________
22._IMC_47___
ATCCCCAC________CCCTAG__TT__
23._IMC_47___
AACCCTAA________CTCCGG__CT__
24._IMC_47___
AAAC__ACGGAG__AGAG__AGAGAGAG
25._IMC_47___
ATCC__ACAGAG__AGGG__AGAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
2._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
3._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
4._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
5._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
6._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
7._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
8._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
9._IMC_47___
______AG____CG________ATAT__
10._IMC_47___
______AG____CG________ATAT__
11._IMC_47___
______AG____CG________ATAT__
12._IMC_47___
______AG____CG________ATAT__
13._IMC_47___
______AG____CG________ATAT__
14._IMC_47___
______AG____CG________ATAT__
15._IMC_47___
______AG____CG________ATAT__
16._IMC_47___
______AG____CG________ATAT__
17._IMC_47___
______AG____CG________ATAT__
18._IMC_47___
______AG____CG________AAAT__
19._IMC_47___
______GG____GG________ATAT__
20._IMC_47___
__________CC________GG__ATCC
21._IMC_47___
______GGCT__________________
22._IMC_47___
______GG____GG________ATAT__
23._IMC_47___
______GG____GG________TTAA__
24._IMC_47___
ATACAAAGCG__CGAGAAAAGGATATCC
25._IMC_47___
ATAAAGGGCC__GGAGAAAAGGATATGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
2._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
3._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
4._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
5._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
6._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
7._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
8._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
9._IMC_47___
CCAT______CG__AGGG____AA____
10._IMC_47___
CCAT______CG__AGGG____AA____
11._IMC_47___
CCAT______CG__AGGG____AA____
12._IMC_47___
CCAT______CG__AGGG____AA____
13._IMC_47___
CCAT______CG__AGGG____AA____
14._IMC_47___
CCAT______CG__AGGG____AA____
15._IMC_47___
CCAT______CG__AGGG____AA____
16._IMC_47___
CCAT______CG__AGGG____AA____
17._IMC_47___
CCAT______CG__AGGG____AA____
18._IMC_47___
CCAT______CC__AAGT____AA____
19._IMC_47___
CCAA______GG__AGGT____AG____
20._IMC_47___
CC______GGCGCCAATT____AGCC__
21._IMC_47___
CC________GG__AA________CC__
22._IMC_47___
CCAA______GG__AATT____AG____
23._IMC_47___
CCAT______GG__AAGT____AG____
24._IMC_47___
GGATAAACAGCGACAGCCACACAAGGAG
25._IMC_47___
GGAAAAACGGCGCCAAAACCAAAGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGATCCAGAACTACAGAGGGCTCTTT
1._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
2._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
3._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
4._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
5._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
6._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
7._IMC_47___
CCGGATCCAGAACTACAGAGGGCTCTTT
8._IMC_47___
CCGGATCCAGAACTACAGAGGGCT__TT
9._IMC_47___
______CC______________CTCT__
10._IMC_47___
______CC______________CTCT__
11._IMC_47___
______CC______________CTCT__
12._IMC_47___
______CC______________CTCT__
13._IMC_47___
______CC______________CTCT__
14._IMC_47___
______CC______________CTCT__
15._IMC_47___
______CC______________CTCT__
16._IMC_47___
______CC______________CTCT__
17._IMC_47___
______CC______________CT____
18._IMC_47___
______CT______________CTCT__
19._IMC_47___
______TT______________CTCC__
20._IMC_47___
__GGTT____GG__________CT__TT
21._IMC_47___
__________GG________________
22._IMC_47___
______TT______________CTCC__
23._IMC_47___
______TT______________CTCC__
24._IMC_47___
GGCC__GG__AAAG__AGAGCCAGAGAA
25._IMC_47___
GGCC__AA__GGGG__GGAGACAGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCTTTACCGAGAAAGGTGTAGCTCC
1._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
2._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
3._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
4._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
5._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
6._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
7._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
8._IMC_47___
AGCGCTTTACCGAGAAAGGTGTAGCTCC
9._IMC_47___
__CG__TTACCG__AAAGGTGT______
10._IMC_47___
__CG__TTACCG__AAAGGTGT______
11._IMC_47___
__CG__TTACCG__AAAGGTGT______
12._IMC_47___
__CG__TTACCG__AAAGGTGT______
13._IMC_47___
__CG__TTACCG__AAAGGTGT______
14._IMC_47___
__CG__TTACCG__AAAGGTGT______
15._IMC_47___
__CG__TTACCG__AAAGGTGT______
16._IMC_47___
__CG__TTACCG__AAAGGTGT______
17._IMC_47___
__CG__TTACCG__AAAGGTGT______
18._IMC_47___
______TTACGG__CCAGGTGG______
19._IMC_47___
__CG__TTACCG__CCAGGGGG______
20._IMC_47___
__CGCCTTAC__GGCCAGGGGGAG____
21._IMC_47___
GG____________CCAG__GGAG____
22._IMC_47___
__CC__TTACCG__CCAGGGGG______
23._IMC_47___
______TTACGG__CCAGGTGG______
24._IMC_47___
AGCGAGAAACCGAGAAAGACACAG____
25._IMC_47___
GGCGGGAAACCGGGCCAGCCCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACGGCCACAAACCGCTAAACTTCT
1._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
2._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
3._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
4._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
5._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
6._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
7._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
8._IMC_47___
AACTACGGCCACAAACCGCTAAACTTCT
9._IMC_47___
AACT__________ACCG______TTCT
10._IMC_47___
AACT__________ACCG______TTCT
11._IMC_47___
AACT__________ACCG______TTCT
12._IMC_47___
AACT__________ACCG______TTCT
13._IMC_47___
AACT__________ACCG______TTCT
14._IMC_47___
AACT__________ACCG______TTCT
15._IMC_47___
AACT__________ACCG______TTCT
16._IMC_47___
AACT__________ACCG______TTCT
17._IMC_47___
AACT__________ACCG______TTCT
18._IMC_47___
AGCT__________ACCG______TTCT
19._IMC_47___
AACC__________ACCG______CCTT
20._IMC_47___
______________ACCG____ACCC__
21._IMC_47___
AA____________ACCG____AC____
22._IMC_47___
AACC__________ACCG______CCTT
23._IMC_47___
AACC__________CCGG______CCTT
24._IMC_47___
__AGACGGCCAC__ACCGAGAAACAAAG
25._IMC_47___
__GGACAGACAC__ACCGGGATACGGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
6._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
7._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
8._IMC_47___
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
9._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
10._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
11._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
12._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
13._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
14._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
15._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
16._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
17._IMC_47___
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
18._IMC_47___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
19._IMC_47___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
20._IMC_47___
____AACCCTGT______X_XX_XX_XX_XX_X
21._IMC_47___
CC____CC__GT______X_XX_XX_XX_XX_X
22._IMC_47___
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
23._IMC_47___
CC__AA__TTGTCT____X_XX_XX_XX_XX_X
24._IMC_47___
__AG____AGACAGATGGX_XX_XX_XX_XX_X
25._IMC_47___
__AG____AGAAAGATGGX_XX_XX_XX_XX_X

Input profile: IMC_47 GC-08-103-3-02

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

7._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._IMC_47 GC-08-103-3-02

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016

10._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

11._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

12._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

13._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

14._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

15._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

16._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

17._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

18._IMC_47

84.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849

71.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._IMC_47 RUQ_849

69.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_47 RUQ_849B

69 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

22._IMC_47

66.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.1 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

55.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

41.8 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240