SNP Profiles of CL 9 /11 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CC	AA	AA	CT	CT	CT	AG	CT	CT	CT	TT	AC
1._GC-08-151-3-50	AT	CT	CC	AA	AA	CT	CT	CT	AG	CT	CT	CT	TT	AC
2._GC-08-151-3-50	AT	CT	CC	AA	AA	CT	CT	CT	AG	CT	CT	CT	TT	AC
3._GC-08-151-3-50	AT	CT	CC	AA	AA	CT	CT	CT	AG	CT	CT	CT	TT	AC
4._GC-08-151-3-50	AT	CT	CC	AA	AA	CT	CT	CT	AG	CT	CT	CT	TT	AC
5._CL_9_/11	AT	CT	CC	__	__	__	__	CT	AG	__	CT	__	__	__
6._CL_9_/11	AT	CT	CC	__	__	__	__	CT	AG	__	CT	__	__	__
7._CL_9_/11	AT	CT	CC	__	__	__	__	CT	AG	__	CT	__	__	__
8._CL_9_/11	AT	CT	CC	__	__	__	__	CT	AG	__	CT	__	__	__
9._CL_9_/11	AT	CT	CC	__	__	__	__	CT	AG	__	CT	__	__	__
10._CL_9_/11	AT	CC	CC	__	__	__	__	TT	GG	__	CT	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG	AT	TT
1._GC-08-151-3-50	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG	AT	TT
2._GC-08-151-3-50	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG	AT	TT
3._GC-08-151-3-50	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG	AT	TT
4._GC-08-151-3-50	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG	AT	TT
5._CL_9_/11	__	AG	__	__	GG	__	__	__	__	AA	__	GG	AT	__
6._CL_9_/11	__	AG	__	__	GG	__	__	__	__	AA	__	GG	AT	__
7._CL_9_/11	__	AG	__	__	GG	__	__	__	__	AA	__	GG	AT	__
8._CL_9_/11	__	AG	__	__	GG	__	__	__	__	AA	__	GG	AT	__
9._CL_9_/11	__	AG	__	__	GG	__	__	__	__	AA	__	GG	AT	__
10._CL_9_/11	__	GG	__	__	GG	__	__	__	__	AA	__	GG	AT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG	GT	AT
1._GC-08-151-3-50	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG	GT	AT
2._GC-08-151-3-50	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG	GT	AT
3._GC-08-151-3-50	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG	GT	AT
4._GC-08-151-3-50	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG	GT	AT
5._CL_9_/11	__	__	CG	__	AA	GG	__	__	AG	__	__	__	__	__
6._CL_9_/11	__	__	CG	__	AA	GG	__	__	AG	__	__	__	__	__
7._CL_9_/11	__	__	CG	__	AA	GG	__	__	AG	__	__	__	__	__
8._CL_9_/11	__	__	CG	__	AA	GG	__	__	AG	__	__	__	__	__
9._CL_9_/11	__	__	CG	__	AA	GG	__	__	AG	__	__	__	__	__
10._CL_9_/11	__	__	CC	__	GG	TT	__	__	AG	__	__	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AA	GG	AG	CT	AC	GG	AA	TT	TT	CT	CT	GT	AG
1._GC-08-151-3-50	CT	AA	GG	AG	CT	AC	GG	AA	TT	__	CT	CT	GT	AG
2._GC-08-151-3-50	CT	AA	GG	AG	CT	AC	GG	AA	TT	__	CT	CT	GT	AG
3._GC-08-151-3-50	CT	AA	GG	AG	CT	AC	GG	AA	TT	__	CT	CT	GT	AG
4._GC-08-151-3-50	CT	AA	GG	AG	CT	AC	GG	AA	TT	__	CT	CT	GT	AG
5._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CT	CT	__	__
6._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CT	CT	__	__
7._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CT	CT	__	__
8._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CT	CT	__	__
9._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CT	CT	__	__
10._CL_9_/11	CT	__	__	__	__	__	__	__	__	__	CC	CT	__	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC	AG
1._GC-08-151-3-50	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC	AG
2._GC-08-151-3-50	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC	AG
3._GC-08-151-3-50	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC	AG
4._GC-08-151-3-50	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC	AG
5._CL_9_/11	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__	AG
6._CL_9_/11	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__	AG
7._CL_9_/11	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__	AG
8._CL_9_/11	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__	AG
9._CL_9_/11	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__	AG
10._CL_9_/11	CC	__	CC	CC	GG	__	CC	AG	GG	TT	__	__	__	GG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	AC	GG	AC	AA	AC	CG	CC	AC	TT	TT	CT	TT	GG
1._GC-08-151-3-50	CT	AC	GG	AC	AA	AC	CG	CC	AC	TT	TT	CT	TT	GG
2._GC-08-151-3-50	CT	AC	GG	AC	AA	AC	CG	CC	AC	TT	TT	CT	TT	GG
3._GC-08-151-3-50	CT	AC	GG	AC	AA	AC	CG	CC	AC	TT	TT	CT	TT	GG
4._GC-08-151-3-50	CT	AC	GG	AC	AA	AC	CG	CC	AC	TT	TT	CT	TT	GG
5._CL_9_/11	CT	__	__	__	__	AC	CG	__	__	TT	TT	CT	__	GG
6._CL_9_/11	CT	__	__	__	__	AC	CG	__	__	TT	TT	CT	__	GG
7._CL_9_/11	CT	__	__	__	__	AC	CG	__	__	TT	TT	CT	__	GG
8._CL_9_/11	CT	__	__	__	__	AC	CG	__	__	TT	TT	CT	__	GG
9._CL_9_/11	CT	__	__	__	__	AC	CG	__	__	TT	TT	CT	__	GG
10._CL_9_/11	CT	__	__	__	__	AA	CC	__	__	TT	TT	CC	__	GG

	85	86	87	88	89	90
_Input profile	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-151-3-50	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-151-3-50	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-151-3-50	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-151-3-50	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CL_9_/11	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CL_9_/11	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CL_9_/11	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CL_9_/11	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CL_9_/11	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CL_9_/11	__	CC	GT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CL_9_/11 GC-08-151-3-50

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._CL_9_/11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8350 11

Dapeng Zhang, 2016

6._CL_9_/11

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 9

Dapeng Zhang, 2016

7._CL_9_/11

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 7

Dapeng Zhang, 2016

8._CL_9_/11

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 4

Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 1

Dapeng Zhang, 2016

10._CL_9_/11

71.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 520

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1165	9	TcSNP429	10	TcSNP75
11	TcSNP891	12	TcSNP122	13	TcSNP316	14	TcSNP521	15	TcSNP860
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP448
26	TcSNP872	27	TcSNP953	28	TcSNP1034	29	TcSNP1175	30	TcSNP1111
31	TcSNP577	32	TcSNP90	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm006s26664133	75	Tcm002s20575712
76	TcSNP529	77	TcSNP1458	78	TcSNP60	79	TcSNP823	80	TcSNP619
81	TcSNP994	82	TcSNP1144	83	TcSNP1156	84	TcSNP469	85	TcSNP999
86	TcSNP242	87	TcSNP1253	88	TcSNP1414	89	TcSNP154	90	TcSNP240