SNP Profiles of CL 9 /11 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	AA	CT	CC	AA	AA	CT	CT	CC	CT	AG	CT	CT	CT
1._GC-08-151-3-50	AT	AA	CT	CC	AA	AA	CT	CT	CC	CT	AG	CT	CT	CT
2._GC-08-151-3-50	AT	AA	CT	CC	AA	AA	CT	CT	CC	CT	AG	CT	CT	CT
3._GC-08-151-3-50	AT	AA	CT	CC	AA	AA	CT	CT	CC	CT	AG	CT	CT	CT
4._GC-08-151-3-50	AT	__	CT	CC	AA	AA	CT	CT	__	CT	AG	CT	CT	CT
5._CL_9_/11	AT	AA	CT	CC	__	__	__	__	CC	CT	AG	__	CT	__
6._CL_9_/11	AT	AA	CT	CC	__	__	__	__	CC	CT	AG	__	CT	__
7._CL_9_/11	AT	AA	CT	CC	__	__	__	__	CC	CT	AG	__	CT	__
8._CL_9_/11	AT	AA	CT	CC	__	__	__	__	CC	CT	AG	__	CT	__
9._CL_9_/11	AT	__	CT	CC	__	__	__	__	__	CT	AG	__	CT	__
10._CL_9_/11	AT	CC	CC	CC	__	__	__	__	CC	TT	GG	__	CT	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AC	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG
1._GC-08-151-3-50	TT	AC	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG
2._GC-08-151-3-50	TT	AC	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG
3._GC-08-151-3-50	TT	AC	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG
4._GC-08-151-3-50	TT	AC	AA	AG	CG	GG	GG	CC	AG	CT	GG	AA	CC	GG
5._CL_9_/11	__	__	__	AG	__	__	GG	__	__	__	__	AA	__	GG
6._CL_9_/11	__	__	__	AG	__	__	GG	__	__	__	__	AA	__	GG
7._CL_9_/11	__	__	__	AG	__	__	GG	__	__	__	__	AA	__	GG
8._CL_9_/11	__	__	__	AG	__	__	GG	__	__	__	__	AA	__	GG
9._CL_9_/11	__	__	__	AG	__	__	GG	__	__	__	__	AA	__	GG
10._CL_9_/11	__	__	__	GG	__	__	GG	__	__	__	__	AA	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG
1._GC-08-151-3-50	AT	TT	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG
2._GC-08-151-3-50	AT	TT	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG
3._GC-08-151-3-50	AT	TT	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG
4._GC-08-151-3-50	AT	TT	TT	GG	CG	CC	AA	GG	GG	TT	AG	CT	AG	CG
5._CL_9_/11	AT	__	__	__	CG	__	AA	GG	__	__	AG	__	__	__
6._CL_9_/11	AT	__	__	__	CG	__	AA	GG	__	__	AG	__	__	__
7._CL_9_/11	AT	__	__	__	CG	__	AA	GG	__	__	AG	__	__	__
8._CL_9_/11	AT	__	__	__	CG	__	AA	GG	__	__	AG	__	__	__
9._CL_9_/11	AT	__	__	__	CG	__	AA	GG	__	__	AG	__	__	__
10._CL_9_/11	AT	__	__	__	CC	__	GG	TT	__	__	AG	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AT	CT	AA	GG	AG	CT	AC	GG	AA	TT	CT	CT	GT
1._GC-08-151-3-50	GT	AT	CT	AA	GG	AG	CT	AC	GG	AA	TT	CT	CT	GT
2._GC-08-151-3-50	GT	AT	CT	AA	GG	AG	CT	AC	GG	AA	TT	CT	CT	GT
3._GC-08-151-3-50	GT	AT	CT	AA	GG	AG	CT	AC	GG	AA	TT	CT	CT	GT
4._GC-08-151-3-50	GT	AT	CT	AA	GG	AG	CT	AC	GG	AA	TT	CT	CT	GT
5._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CT	CT	__
6._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CT	CT	__
7._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CT	CT	__
8._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CT	CT	__
9._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CT	CT	__
10._CL_9_/11	__	__	CT	__	__	__	__	__	__	__	__	CC	CT	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC
1._GC-08-151-3-50	AG	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC
2._GC-08-151-3-50	AG	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC
3._GC-08-151-3-50	AG	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC
4._GC-08-151-3-50	AG	CC	CT	CT	CC	CG	GG	CC	AA	GG	GG	AG	TT	CC
5._CL_9_/11	__	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__
6._CL_9_/11	__	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__
7._CL_9_/11	__	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__
8._CL_9_/11	__	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__
9._CL_9_/11	__	CC	__	CT	CC	CG	__	CC	AA	GG	GG	__	__	__
10._CL_9_/11	__	CC	__	CC	CC	GG	__	CC	AG	GG	TT	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AG	CT	AC	GG	AA	AC	AA	AC	CG	CC	AA	AC	TT	TT
1._GC-08-151-3-50	AG	CT	AC	GG	AA	AC	AA	AC	CG	CC	AA	AC	TT	TT
2._GC-08-151-3-50	AG	CT	AC	GG	AA	AC	AA	AC	CG	CC	AA	AC	TT	TT
3._GC-08-151-3-50	AG	CT	AC	GG	AA	AC	AA	AC	CG	CC	AA	AC	TT	TT
4._GC-08-151-3-50	AG	CT	AC	GG	__	AC	AA	AC	CG	CC	__	AC	TT	TT
5._CL_9_/11	AG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	TT
6._CL_9_/11	AG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	TT
7._CL_9_/11	AG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	TT
8._CL_9_/11	AG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	TT
9._CL_9_/11	AG	CT	__	__	__	__	__	AC	CG	__	__	__	TT	TT
10._CL_9_/11	GG	CT	__	__	__	__	__	AA	CC	__	__	__	TT	TT

	85	86	87	88	89	90	91	92	93
_Input profile	CT	TT	GG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-08-151-3-50	CT	TT	GG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-08-151-3-50	CT	TT	GG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-08-151-3-50	CT	TT	GG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-08-151-3-50	CT	TT	GG	CC	CC	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
5._CL_9_/11	CT	__	GG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
6._CL_9_/11	CT	__	GG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
7._CL_9_/11	CT	__	GG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
8._CL_9_/11	CT	__	GG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
9._CL_9_/11	CT	__	GG	__	CC	GG	CT	__	__	X_X	X_X	X_X	X_X	X_X
10._CL_9_/11	CC	__	GG	__	CC	GT	TT	__	__	X_X	X_X	X_X	X_X	X_X

Input profile: CL_9_/11 GC-08-151-3-50

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._CL_9_/11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8350 11

Dapeng Zhang, 2016

6._CL_9_/11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 9

Dapeng Zhang, 2016

7._CL_9_/11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 7

Dapeng Zhang, 2016

8._CL_9_/11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8350 4

Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8350 1

Dapeng Zhang, 2016

10._CL_9_/11

70.5 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 520

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240